Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 3
- golgi 3
- plasma membrane 3
- endoplasmic reticulum 4
- vacuole 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G169700.5 | Wheat | nucleus | 87.82 | 76.0 |
| TraesCS2B01G188600.1 | Wheat | nucleus, plastid | 79.41 | 69.49 |
| KXG36736 | Sorghum | nucleus | 65.97 | 62.8 |
| HORVU2Hr1G029640.1 | Barley | mitochondrion | 36.55 | 62.59 |
| Zm00001d006906_P010 | Maize | mitochondrion | 65.13 | 61.51 |
| Os07t0623300-01 | Rice | nucleus | 67.23 | 58.18 |
| Zm00001d022189_P002 | Maize | nucleus | 58.82 | 55.12 |
| VIT_18s0001g05550.t01 | Wine grape | nucleus | 57.56 | 53.31 |
| KRH42160 | Soybean | nucleus | 59.24 | 52.81 |
| KRH58277 | Soybean | nucleus | 59.24 | 52.81 |
| VIT_12s0142g00110.t01 | Wine grape | nucleus | 55.88 | 52.16 |
| Solyc01g105140.2.1 | Tomato | nucleus | 55.46 | 51.97 |
| Solyc04g074040.2.1 | Tomato | nucleus | 55.88 | 51.55 |
| PGSC0003DMT400032709 | Potato | nucleus | 54.62 | 51.18 |
| PGSC0003DMT400045694 | Potato | nucleus | 55.46 | 51.16 |
| GSMUA_Achr10P... | Banana | nucleus | 49.16 | 49.37 |
| Bra024276.1-P | Field mustard | nucleus | 53.36 | 45.36 |
| AT5G64200.2 | Thale cress | nucleus | 53.36 | 41.91 |
| CDX84503 | Canola | nucleus | 32.77 | 28.78 |
| CDY43799 | Canola | vacuole | 29.83 | 21.98 |
| TraesCS2A01G155100.1 | Wheat | nucleus | 17.65 | 20.49 |
| TraesCS4A01G289300.1 | Wheat | nucleus | 22.69 | 20.3 |
| TraesCS5A01G079000.1 | Wheat | nucleus | 21.43 | 17.23 |
| TraesCS4A01G141800.2 | Wheat | nucleus | 17.65 | 16.8 |
| TraesCS4A01G176000.13 | Wheat | nucleus | 21.85 | 5.71 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF40 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SUPFAM:SSF54928 | SignalP:SignalP-noTM | EnsemblPlantsGene:TraesCS2A01G162700 | EnsemblPlants:TraesCS2A01G162700.3 |
| TIGR:cd00590 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2A:-:115120143..115122452
Molecular Weight (calculated)
27968.5 Da
IEP (calculated)
11.854
GRAVY (calculated)
-1.639
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MLFVHLHTEF LGFWELFHVV CTSIFCRTGD SRGFAFVRYK YEDEAQKAVD RLDGRLVDGR EMMVQFAKYG PNAERIQKGR IMETVPKPRG RSRSRSPRRG
101: YRDDHRGRDS RRRSRSRSGD RYGRDRYRER DHHRRSRSRS TSPDDYKRRG RDRSPSRSRS RSYSPDDDRK GGRDSLSPAR RSTSRSPRKT PPPRKTPPPC
201: EGSPAKRNDD RSPVRRNDDR SPVRRNDDRS PGSRSPST
101: YRDDHRGRDS RRRSRSRSGD RYGRDRYRER DHHRRSRSRS TSPDDYKRRG RDRSPSRSRS RSYSPDDDRK GGRDSLSPAR RSTSRSPRKT PPPRKTPPPC
201: EGSPAKRNDD RSPVRRNDDR SPVRRNDDRS PGSRSPST
001: MSHFGRSGPP DISDTYSLLV LNITFRTTAD DLYPLFAKYG KVVDVFIPRD RRTGDSRGFA FVRYKYKDEA HKAVERLDGR VVDGREITVQ FAKYGPNAEK
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE
Arabidopsis Description
SC35Serine/arginine-rich splicing factor SC35 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMG4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.