Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G093200.1 | Wheat | nucleus, plastid | 99.66 | 99.66 |
| TraesCS5B01G087000.2 | Wheat | nucleus, plastid | 99.66 | 99.66 |
| HORVU5Hr1G021180.4 | Barley | nucleus, plastid | 97.3 | 95.68 |
| Os12t0572400-01 | Rice | nucleus | 75.34 | 84.79 |
| EES16196 | Sorghum | nucleus | 73.31 | 82.82 |
| TraesCS4A01G289300.1 | Wheat | nucleus | 68.92 | 76.69 |
| GSMUA_Achr8P34280_001 | Banana | nucleus | 59.46 | 65.43 |
| GSMUA_Achr1P17340_001 | Banana | nucleus | 58.78 | 64.93 |
| KRH15102 | Soybean | nucleus | 55.74 | 60.89 |
| KRH73034 | Soybean | nucleus | 55.07 | 59.06 |
| Zm00001d030739_P002 | Maize | mitochondrion, nucleus, plastid | 72.97 | 58.54 |
| CDY02941 | Canola | nucleus | 54.39 | 57.91 |
| CDX76092 | Canola | plastid | 54.39 | 57.09 |
| AT3G55460.1 | Thale cress | mitochondrion, nucleus | 50.0 | 56.49 |
| Bra014741.1-P | Field mustard | mitochondrion, nucleus, plastid | 54.39 | 54.58 |
| VIT_13s0019g01060.t01 | Wine grape | nucleus | 59.8 | 50.14 |
| TraesCS2A01G155100.1 | Wheat | nucleus | 33.11 | 47.8 |
| TraesCS4A01G141800.2 | Wheat | nucleus | 30.41 | 36.0 |
| TraesCS2A01G162700.3 | Wheat | nucleus | 17.23 | 21.43 |
| TraesCS4A01G176000.13 | Wheat | nucleus | 49.66 | 16.15 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G079000.1 | EnsemblPlantsGene:TraesCS5A01G079000 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR23147 |
| PANTHER:PTHR23147:SF1 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| MapMan:16.4.6.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:98034184..98037816
Molecular Weight (calculated)
33173.3 Da
IEP (calculated)
11.819
GRAVY (calculated)
-1.525
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRYSPPHRS PPRRGYGGSP AHRSPPRRGY GGSPPHRSPP KRGYGGRGRS PPRRGGYGGR KEQGSGSLLV RNIPLSARAE DLRVPFERFG PVRDVYLPKD
101: YYSGEPRGFA FVEFVDPYDA SEAQYHMNRQ VFFGREITVV LAAESRKRPE DMRTRTRVRG YSGGHEGRRS SHYGRSRSRS RSASPRPRGG GRARSRSYSP
201: APRRRDDYSA SPRGRESHRT KSPVRHPKEH EEDKRRSYSP PGRDGDQRDA DNGYEKRSPP ADSDGSPSRP RVARPSSGSP PGSRSRSPDA SPARSD
101: YYSGEPRGFA FVEFVDPYDA SEAQYHMNRQ VFFGREITVV LAAESRKRPE DMRTRTRVRG YSGGHEGRRS SHYGRSRSRS RSASPRPRGG GRARSRSYSP
201: APRRRDDYSA SPRGRESHRT KSPVRHPKEH EEDKRRSYSP PGRDGDQRDA DNGYEKRSPP ADSDGSPSRP RVARPSSGSP PGSRSRSPDA SPARSD
001: MRGRSYTPSP PRGYGRRGRS PSPRGRFGGS RDSDLPTSLL VRNLRHDCRQ EDLRRPFEQF GPVKDIYLPR DYYTGDPRGF GFIQFMDPAD AAEAKHQMDG
101: YLLLGRELTV VFAEENRKKP TEMRTRDRGG RSNRFQDRRR SPPRYSRSPP PRRGRRSRSR SRGYNSPPAK RHQSRSVSPQ DRRYEKERSY SRSPPHNGSR
201: VRSGSPGRVK SHSRSPRRSV SPRKNRSYTP EQARSQSPVP RQSRSPTPVP RGAQNGDRSP SQ
101: YLLLGRELTV VFAEENRKKP TEMRTRDRGG RSNRFQDRRR SPPRYSRSPP PRRGRRSRSR SRGYNSPPAK RHQSRSVSPQ DRRYEKERSY SRSPPHNGSR
201: VRSGSPGRVK SHSRSPRRSV SPRKNRSYTP EQARSQSPVP RQSRSPTPVP RGAQNGDRSP SQ
Arabidopsis Description
SCL30ASerine/arginine-rich SC35-like splicing factor SCL30A [Source:UniProtKB/Swiss-Prot;Acc:Q9LHP2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.