Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G289300.1 | Wheat | nucleus | 95.54 | 96.62 |
| TraesCS4D01G022700.1 | Wheat | nucleus | 94.8 | 93.75 |
| HORVU4Hr1G003820.8 | Barley | nucleus | 91.45 | 92.48 |
| HORVU7Hr1G118660.4 | Barley | nucleus | 76.95 | 91.19 |
| HORVU4Hr1G058060.2 | Barley | mitochondrion, nucleus | 75.46 | 88.26 |
| HORVU6Hr1G034010.3 | Barley | nucleus | 78.81 | 80.92 |
| Os02t0252100-02 | Rice | nucleus | 78.07 | 79.25 |
| HORVU2Hr1G073490.2 | Barley | cytosol, nucleus | 47.58 | 76.65 |
| TraesCS5B01G087000.2 | Wheat | nucleus, plastid | 75.84 | 68.92 |
| GSMUA_Achr1P17340_001 | Banana | nucleus | 63.57 | 63.81 |
| GSMUA_Achr8P34280_001 | Banana | nucleus | 63.2 | 63.2 |
| KRH15102 | Soybean | nucleus | 59.48 | 59.04 |
| KRH73034 | Soybean | nucleus | 59.48 | 57.97 |
| CDY02941 | Canola | nucleus | 58.74 | 56.83 |
| AT3G55460.1 | Thale cress | mitochondrion, nucleus | 54.65 | 56.11 |
| CDX76092 | Canola | plastid | 58.74 | 56.03 |
| Bra014741.1-P | Field mustard | mitochondrion, nucleus, plastid | 58.74 | 53.56 |
| TraesCS2B01G180200.1 | Wheat | nucleus | 37.17 | 48.31 |
| VIT_13s0019g01060.t01 | Wine grape | nucleus | 62.08 | 47.31 |
| TraesCS4B01G156200.1 | Wheat | nucleus | 33.46 | 37.66 |
| TraesCS2B01G188600.1 | Wheat | nucleus, plastid | 27.14 | 26.84 |
| TraesCS4B01G141700.1 | Wheat | nucleus | 36.8 | 12.47 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G025600.1 | EnsemblPlantsGene:TraesCS4B01G025600 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR23147 |
| PANTHER:PTHR23147:SF1 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| MapMan:16.4.6.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:18423367..18426436
Molecular Weight (calculated)
30609.4 Da
IEP (calculated)
11.779
GRAVY (calculated)
-1.491
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRYSPQYRS PPRRGYGGRG RSPPRRGYGG RREQGSGSLL VRNIPLSCRP EDLRVPFERF GPVRDVYLPK DYYTREPRGF AFVEFVDPYD ASDAQYHLNH
101: TVFCGREITV VVAAESRKRP DDMRNRARIR GYSGEPERRH SRYGRSRSRS RSCSPRYRGR PQSRSRSRSR SYSPAPRRQG DYSASPPRSH HTQSPRRLPK
201: GHEEDKRRSY SPAGRGGGER DADTNGKRSP PPSDIDGSPP PPRRSPRQSS GSPVGSRSRS PEASPARSD
101: TVFCGREITV VVAAESRKRP DDMRNRARIR GYSGEPERRH SRYGRSRSRS RSCSPRYRGR PQSRSRSRSR SYSPAPRRQG DYSASPPRSH HTQSPRRLPK
201: GHEEDKRRSY SPAGRGGGER DADTNGKRSP PPSDIDGSPP PPRRSPRQSS GSPVGSRSRS PEASPARSD
001: MRRYSPPYYS PPRRGYGGRG RSPPPPPPRR GYGGGGGGGG RRGSSHGSLL VRNIPLDCRP EELREPFERF GPVRDVYIPR DYYSGQPRGF AFVEFVDAYD
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR
Arabidopsis Description
SCL30Serine/arginine-rich SC35-like splicing factor SCL30 [Source:UniProtKB/Swiss-Prot;Acc:Q8L3X8]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.