Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G176000.13 | Wheat | nucleus | 94.49 | 94.18 |
| TraesCS4B01G141700.1 | Wheat | nucleus | 77.95 | 89.04 |
| HORVU4Hr1G027820.11 | Barley | nucleus, plastid | 79.27 | 65.72 |
| EES10309 | Sorghum | nucleus | 15.44 | 51.85 |
| GSMUA_Achr8P34280_001 | Banana | nucleus | 15.21 | 51.3 |
| TraesCS4D01G022700.1 | Wheat | nucleus | 14.99 | 50.0 |
| CDY02941 | Canola | nucleus | 15.21 | 49.64 |
| KRH15102 | Soybean | nucleus | 14.77 | 49.45 |
| CDX76092 | Canola | plastid | 15.33 | 49.29 |
| KRH73034 | Soybean | nucleus | 14.99 | 49.28 |
| GSMUA_Achr1P17340_001 | Banana | nucleus | 14.55 | 49.25 |
| TraesCS5D01G093200.1 | Wheat | nucleus, plastid | 15.77 | 48.31 |
| AT3G55460.1 | Thale cress | mitochondrion, nucleus | 13.67 | 47.33 |
| Bra014741.1-P | Field mustard | mitochondrion, nucleus, plastid | 15.33 | 47.12 |
| Zm00001d048609_P001 | Maize | nucleus, plastid | 14.77 | 46.53 |
| VIT_13s0019g01060.t01 | Wine grape | nucleus | 15.66 | 40.23 |
| TraesCS2D01G160400.1 | Wheat | nucleus | 8.6 | 38.05 |
| TraesCS4D01G162900.1 | Wheat | nucleus | 7.94 | 30.25 |
| Os11t0704700-01 | Rice | nucleus | 14.22 | 25.24 |
| TraesCS2D01G169700.5 | Wheat | nucleus | 7.61 | 25.09 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G136700.4 | EnsemblPlantsGene:TraesCS4D01G136700 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR23147 |
| PANTHER:PTHR23147:SF1 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| MapMan:16.4.6.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:122708102..122717117
Molecular Weight (calculated)
104401.0 Da
IEP (calculated)
10.175
GRAVY (calculated)
-1.976
Length
907 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRSRSPKGG DDGRRRSTPR RSSDEQGGRK EKGPISLLVR NIPHNCRYED LRVPFAKFGP VRDIYMPKDY YSGEPKGFAF IEFFDSHDAS EAQYHMNHKL
101: FCGREIKVEP ATDKRKRPED MRRRTGVRVH SGSKGHDLSR HGRSRSRSHS RSPRQGGRDR SRSHSPAPRR HGDYSASPKR KEECQAKSSG QSKEHDNDKK
201: LGSCTPGGRS ERHDTDNDSN ERRATPNYSA APKRTEACQT KSPRQANEHD EDKKHISFSP DRNNHRDADN GHNERDDYST SSKRKGERLS KSLRLSKEHD
301: EDKKRRSYSR DDRSDCRDAD NSFKESRATT DAKRSCPRQR SPRPSAGSHS RRRDAYSASP KGKEERREQS PRQSKVHDKH RKRRSNTPDD RNDCHGADHS
401: HNEMQGDCST SPKIKEERQA KSSRESEEYN KDTKGRSCAP HDRNDHHDAV NGSREKPVTP DDEGSHACRR SPRPSSGSRS RKRDDCSASP KKKEESWAKS
501: PKQSIEYKDE KRRSCTADDI NGRHHAVNCY KKKRDGYSAS PKIKEECRAE SPRPTKERED NGGIDRTDAD NGYNERRAGP DSASQKRMEK PPQAKSQSQS
601: KEYDNGKNRS YTHDDGKECR DADNVSKERK DYSAAGKRKE ERQASLPRQS KEHDEHKKRG SYTRDDRNDL RDADNGSKER RKDYSASGKR KEERQASLPR
701: QSKEHEEHKK RGCYTRDDRN DLCDADNGSK ERRKDYSAAG KRKEERQASL PRQSKEHDEH KKRGSYTPDD RDDPRDADNG SKERNDYSAS RKRMEDYRAK
801: SSRQSNEHDD DKKRGSYTPD DRSHRSDADN RSRERRGDFS ASGQRKEEYL GKSPRQLKEH GDNKKRGSYT PADRNDLRDV DNGCNEKLAT DDGSRSPCPG
901: RRSPRPS
101: FCGREIKVEP ATDKRKRPED MRRRTGVRVH SGSKGHDLSR HGRSRSRSHS RSPRQGGRDR SRSHSPAPRR HGDYSASPKR KEECQAKSSG QSKEHDNDKK
201: LGSCTPGGRS ERHDTDNDSN ERRATPNYSA APKRTEACQT KSPRQANEHD EDKKHISFSP DRNNHRDADN GHNERDDYST SSKRKGERLS KSLRLSKEHD
301: EDKKRRSYSR DDRSDCRDAD NSFKESRATT DAKRSCPRQR SPRPSAGSHS RRRDAYSASP KGKEERREQS PRQSKVHDKH RKRRSNTPDD RNDCHGADHS
401: HNEMQGDCST SPKIKEERQA KSSRESEEYN KDTKGRSCAP HDRNDHHDAV NGSREKPVTP DDEGSHACRR SPRPSSGSRS RKRDDCSASP KKKEESWAKS
501: PKQSIEYKDE KRRSCTADDI NGRHHAVNCY KKKRDGYSAS PKIKEECRAE SPRPTKERED NGGIDRTDAD NGYNERRAGP DSASQKRMEK PPQAKSQSQS
601: KEYDNGKNRS YTHDDGKECR DADNVSKERK DYSAAGKRKE ERQASLPRQS KEHDEHKKRG SYTRDDRNDL RDADNGSKER RKDYSASGKR KEERQASLPR
701: QSKEHEEHKK RGCYTRDDRN DLCDADNGSK ERRKDYSAAG KRKEERQASL PRQSKEHDEH KKRGSYTPDD RDDPRDADNG SKERNDYSAS RKRMEDYRAK
801: SSRQSNEHDD DKKRGSYTPD DRSHRSDADN RSRERRGDFS ASGQRKEEYL GKSPRQLKEH GDNKKRGSYT PADRNDLRDV DNGCNEKLAT DDGSRSPCPG
901: RRSPRPS
001: MRRYSPPYYS PPRRGYGGRG RSPPPPPPRR GYGGGGGGGG RRGSSHGSLL VRNIPLDCRP EELREPFERF GPVRDVYIPR DYYSGQPRGF AFVEFVDAYD
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR
Arabidopsis Description
SCL30Serine/arginine-rich SC35-like splicing factor SCL30 [Source:UniProtKB/Swiss-Prot;Acc:Q8L3X8]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.