Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G155100.1 | Wheat | nucleus | 99.51 | 99.51 |
| TraesCS2B01G180200.1 | Wheat | nucleus | 98.54 | 97.58 |
| HORVU2Hr1G028210.9 | Barley | nucleus | 97.07 | 95.67 |
| Os07t0633200-02 | Rice | nucleus | 78.05 | 75.12 |
| EER97602 | Sorghum | nucleus | 75.12 | 73.68 |
| Zm00001d022243_P002 | Maize | nucleus | 73.66 | 72.25 |
| CDY08473 | Canola | nucleus | 58.05 | 58.05 |
| Bra034794.1-P | Field mustard | nucleus | 58.54 | 57.97 |
| GSMUA_Achr4P13560_001 | Banana | nucleus | 60.0 | 56.68 |
| GSMUA_Achr9P21660_001 | Banana | nucleus | 65.37 | 54.69 |
| VIT_06s0004g00710.t01 | Wine grape | nucleus | 64.39 | 53.88 |
| KRH16958 | Soybean | nucleus | 64.39 | 53.01 |
| KRH72576 | Soybean | nucleus | 63.41 | 51.38 |
| Solyc01g005820.2.1 | Tomato | nucleus | 61.95 | 50.4 |
| CDY01078 | Canola | nucleus | 58.05 | 50.0 |
| PGSC0003DMT400081835 | Potato | nucleus | 59.51 | 49.19 |
| AT3G13570.1 | Thale cress | nucleus | 58.54 | 45.8 |
| PGSC0003DMT400010908 | Potato | nucleus | 58.54 | 42.86 |
| AT1G55310.3 | Thale cress | nucleus | 60.0 | 41.14 |
| KRH38014 | Soybean | endoplasmic reticulum, nucleus | 57.07 | 40.91 |
| TraesCS4D01G022700.1 | Wheat | nucleus | 48.78 | 36.76 |
| TraesCS4D01G162900.1 | Wheat | nucleus | 41.95 | 36.13 |
| TraesCS5D01G093200.1 | Wheat | nucleus, plastid | 47.8 | 33.11 |
| TraesCS2D01G169700.5 | Wheat | nucleus | 32.2 | 24.0 |
| TraesCS4D01G136700.4 | Wheat | nucleus | 38.05 | 8.6 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G160400.1 | EnsemblPlantsGene:TraesCS2D01G160400 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR23147 |
| PANTHER:PTHR23147:SF41 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| MapMan:16.4.6.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:103165759..103168111
Molecular Weight (calculated)
23876.9 Da
IEP (calculated)
11.815
GRAVY (calculated)
-1.424
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRGYSYSPS PPPRGYRGRA RSPSPRDRYD GRGRDLPTSL LVRNLRRDCR PDDLRRPFAQ FGRLKDVYIP RDYYTQEPRG FGFVQYFDPN DAADAKYYMD
101: GQVILGREVA VVFAQENRKK PAEMRTRESS RGRSYDRRHS PSPRRRPSYR GRSYSRSPSP RPARRRFRDE SPSRSRSPSG SRSASPLDGK YGRSSRRERS
201: ISVSG
101: GQVILGREVA VVFAQENRKK PAEMRTRESS RGRSYDRRHS PSPRRRPSYR GRSYSRSPSP RPARRRFRDE SPSRSRSPSG SRSASPLDGK YGRSSRRERS
201: ISVSG
001: MRGRSYTPSP PRGYGRRGRS PSPRGRYGGR SRDLPTSLLV RNLRHDCRQE DLRKSFEQFG PVKDIYLPRD YYTGDPRGFG FVQFMDPADA ADAKHHMDGY
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPTQEEA
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPTQEEA
Arabidopsis Description
SR33SC35-like splicing factor 33 [Source:TAIR;Acc:AT1G55310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.