Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039394.1-P | Field mustard | nucleus | 89.69 | 89.35 |
| CDY24176 | Canola | nucleus | 88.93 | 89.27 |
| CDY07084 | Canola | nucleus | 89.31 | 88.97 |
| GSMUA_Achr4P13560_001 | Banana | nucleus | 57.25 | 69.12 |
| AT1G55310.3 | Thale cress | nucleus | 76.34 | 66.89 |
| Os03t0374575-01 | Rice | nucleus | 54.58 | 65.9 |
| PGSC0003DMT400081835 | Potato | nucleus | 62.21 | 65.73 |
| EER92211 | Sorghum | nucleus | 52.29 | 64.32 |
| Solyc01g005820.2.1 | Tomato | nucleus | 61.83 | 64.29 |
| Zm00001d022243_P002 | Maize | nucleus | 51.15 | 64.11 |
| EER97602 | Sorghum | nucleus | 51.15 | 64.11 |
| Zm00001d047401_P001 | Maize | nucleus | 52.29 | 63.43 |
| GSMUA_Achr9P21660_001 | Banana | nucleus | 59.16 | 63.27 |
| Os07t0633200-02 | Rice | nucleus | 49.24 | 60.56 |
| TraesCS2A01G155100.1 | Wheat | nucleus | 46.18 | 59.02 |
| PGSC0003DMT400010908 | Potato | nucleus | 62.6 | 58.57 |
| TraesCS2D01G160400.1 | Wheat | nucleus | 45.8 | 58.54 |
| TraesCS2B01G180200.1 | Wheat | nucleus | 46.18 | 58.45 |
| Zm00001d029629_P001 | Maize | nucleus | 9.92 | 57.78 |
| HORVU2Hr1G028210.9 | Barley | nucleus | 45.42 | 57.21 |
| Zm00001d019443_P002 | Maize | nucleus | 22.9 | 56.6 |
| Zm00001d005285_P001 | Maize | nucleus | 30.15 | 55.24 |
| Zm00001d016504_P001 | Maize | nucleus | 15.65 | 54.67 |
| Zm00001d004470_P001 | Maize | nucleus | 22.9 | 54.05 |
| Zm00001d029305_P001 | Maize | nucleus | 31.68 | 50.61 |
| Zm00001d010881_P001 | Maize | nucleus | 32.82 | 46.99 |
| KRH38014 | Soybean | endoplasmic reticulum, nucleus | 50.0 | 45.8 |
| AT5G18810.1 | Thale cress | nucleus | 38.17 | 42.37 |
| AT3G55460.1 | Thale cress | mitochondrion, nucleus | 40.84 | 40.84 |
| Zm00001d012570_P002 | Maize | extracellular | 24.05 | 38.65 |
| Zm00001d015189_P001 | Maize | nucleus | 24.81 | 36.93 |
| Zm00001d005739_P004 | Maize | cytosol | 14.89 | 35.45 |
| Zm00001d043759_P001 | Maize | cytosol | 18.7 | 31.82 |
| Zm00001d010176_P001 | Maize | cytosol | 13.36 | 30.7 |
| Zm00001d013841_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 24.05 | 29.17 |
| AT5G64200.2 | Thale cress | nucleus | 29.39 | 25.41 |
| Zm00001d004722_P001 | Maize | cytosol | 9.92 | 24.53 |
Protein Annotations
| MapMan:16.4.6.2 | Gene3D:3.30.70.330 | EntrezGene:820559 | ProteinID:AEE75375.1 | EMBL:AF370268 | EMBL:AJ293800 |
| ArrayExpress:AT3G13570 | EnsemblPlantsGene:AT3G13570 | RefSeq:AT3G13570 | TAIR:AT3G13570 | RefSeq:AT3G13570-TAIR-G | EnsemblPlants:AT3G13570.1 |
| TAIR:AT3G13570.1 | EMBL:AY063026 | ProteinID:BAB02599.1 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005681 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 |
| GO:GO:0016607 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_187966.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR23147 |
| PANTHER:PTHR23147:SF41 | UniProt:Q9LHP2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | Symbol:SCL30A | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI00000A05EA | SEG:seg | : | : | : |
Description
SCL30ASerine/arginine-rich SC35-like splicing factor SCL30A [Source:UniProtKB/Swiss-Prot;Acc:Q9LHP2]
Coordinates
chr3:-:4429256..4432159
Molecular Weight (calculated)
30228.3 Da
IEP (calculated)
12.178
GRAVY (calculated)
-1.578
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGRSYTPSP PRGYGRRGRS PSPRGRFGGS RDSDLPTSLL VRNLRHDCRQ EDLRRPFEQF GPVKDIYLPR DYYTGDPRGF GFIQFMDPAD AAEAKHQMDG
101: YLLLGRELTV VFAEENRKKP TEMRTRDRGG RSNRFQDRRR SPPRYSRSPP PRRGRRSRSR SRGYNSPPAK RHQSRSVSPQ DRRYEKERSY SRSPPHNGSR
201: VRSGSPGRVK SHSRSPRRSV SPRKNRSYTP EQARSQSPVP RQSRSPTPVP RGAQNGDRSP SQ
101: YLLLGRELTV VFAEENRKKP TEMRTRDRGG RSNRFQDRRR SPPRYSRSPP PRRGRRSRSR SRGYNSPPAK RHQSRSVSPQ DRRYEKERSY SRSPPHNGSR
201: VRSGSPGRVK SHSRSPRRSV SPRKNRSYTP EQARSQSPVP RQSRSPTPVP RGAQNGDRSP SQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.