Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024276.1-P | Field mustard | nucleus | 78.22 | 84.64 |
| HORVU2Hr1G029640.1 | Barley | mitochondrion | 34.32 | 74.82 |
| KRH58277 | Soybean | nucleus | 60.73 | 68.91 |
| KRH42160 | Soybean | nucleus | 60.4 | 68.54 |
| VIT_12s0142g00110.t01 | Wine grape | nucleus | 56.11 | 66.67 |
| GSMUA_Achr10P... | Banana | nucleus | 51.82 | 66.24 |
| KXG36736 | Sorghum | nucleus | 52.81 | 64.0 |
| Solyc01g105140.2.1 | Tomato | nucleus | 52.81 | 62.99 |
| PGSC0003DMT400032709 | Potato | nucleus | 52.15 | 62.2 |
| Zm00001d006906_P010 | Maize | mitochondrion | 51.49 | 61.9 |
| Zm00001d022189_P002 | Maize | nucleus | 50.16 | 59.84 |
| Os07t0623300-01 | Rice | nucleus | 53.47 | 58.91 |
| TraesCS2D01G169700.5 | Wheat | nucleus | 53.14 | 58.55 |
| CDX84503 | Canola | nucleus | 51.16 | 57.2 |
| KXG39239 | Sorghum | nucleus | 41.91 | 53.81 |
| TraesCS2B01G188600.1 | Wheat | nucleus, plastid | 48.18 | 53.68 |
| TraesCS2A01G162700.3 | Wheat | nucleus | 41.91 | 53.36 |
| HORVU2Hr1G029630.1 | Barley | plastid | 22.44 | 50.0 |
| CDY43799 | Canola | vacuole | 37.62 | 35.29 |
| AT3G55460.1 | Thale cress | mitochondrion, nucleus | 25.74 | 29.77 |
| AT3G13570.1 | Thale cress | nucleus | 25.41 | 29.39 |
| AT5G18810.1 | Thale cress | nucleus | 22.44 | 28.81 |
| AT1G55310.3 | Thale cress | nucleus | 28.05 | 28.43 |
| Zm00001d029380_P002 | Maize | cytosol, nucleus, plasma membrane | 33.0 | 23.15 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:836541 | UniProt:A0A178U800 | ProteinID:AED97853.1 | ProteinID:AED97854.1 |
| ArrayExpress:AT5G64200 | EnsemblPlantsGene:AT5G64200 | RefSeq:AT5G64200 | TAIR:AT5G64200 | RefSeq:AT5G64200-TAIR-G | EnsemblPlants:AT5G64200.2 |
| TAIR:AT5G64200.2 | Symbol:ATSC35 | EMBL:AY063890 | EMBL:AY122917 | EMBL:AY127004 | EMBL:AY143851 |
| Unigene:At.23698 | ProteinID:BAB09851.1 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005681 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006397 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016607 |
| InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_201225.1 | RefSeq:NP_851261.1 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OAO89770.1 |
| PFAM:PF00076 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF42 |
| UniProt:Q9FMG4 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 |
| SUPFAM:SSF54928 | UniParc:UPI00000ABEF5 | SEG:seg | : | : | : |
Description
SC35Serine/arginine-rich splicing factor SC35 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMG4]
Coordinates
chr5:-:25681240..25683641
Molecular Weight (calculated)
35172.0 Da
IEP (calculated)
12.052
GRAVY (calculated)
-1.584
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHFGRSGPP DISDTYSLLV LNITFRTTAD DLYPLFAKYG KVVDVFIPRD RRTGDSRGFA FVRYKYKDEA HKAVERLDGR VVDGREITVQ FAKYGPNAEK
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.