Factsheet for GSMUA_Achr10P19090_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P17340_001
GSMUA_Achr4P13560_001
GSMUA_Achr5P27460_001
GSMUA_Achr5P27470_001
GSMUA_Achr6P15450_001
GSMUA_Achr8P00210_001
GSMUA_Achr8P00220_001
GSMUA_Achr8P09080_001
GSMUA_Achr8P10150_001
GSMUA_Achr8P34280_001
GSMUA_Achr9P21660_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64200.2	GSMUA_Achr11P...	AT1G02840.1	18674533
AT5G64200.2	GSMUA_Achr8P10150_001	AT1G02840.1	18674533
AT5G64200.2	GSMUA_Achr10P...	AT1G53720.1	16497658
AT5G64200.2	GSMUA_Achr10P...	AT2G37340.1	18674533
AT5G64200.2	GSMUA_Achr6P15450_001	AT2G37340.1	18674533
AT5G64200.2	GSMUA_Achr8P09080_001	AT2G43370.1	15987817
AT5G64200.2	GSMUA_Achr4P13560_001	AT3G13570.1	18674533
AT5G64200.2	GSMUA_Achr9P21660_001	AT3G13570.1	18674533
AT5G64200.2	GSMUA_Achr1P17340_001	AT3G55460.1	18674533
AT5G64200.2	GSMUA_Achr8P34280_001	AT3G55460.1	18674533
AT5G64200.2	GSMUA_Achr5P27460_001	AT5G18810.1	18674533
AT5G64200.2	GSMUA_Achr5P27470_001	AT5G18810.1	18674533
AT5G64200.2	GSMUA_Achr8P00210_001	AT5G18810.1	18674533
AT5G64200.2	GSMUA_Achr8P00220_001	AT5G18810.1	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G029640.1	Barley	mitochondrion	45.15	76.98
Solyc04g074040.2.1	Tomato	nucleus	76.37	70.16
GSMUA_Achr2P00600_001	Banana	nucleus	73.0	70.04
VIT_18s0001g05550.t01	Wine grape	nucleus	75.53	69.65
PGSC0003DMT400045694	Potato	nucleus	75.53	69.38
GSMUA_Achr5P05380_001	Banana	nucleus	72.15	67.06
KXG36736	Sorghum	nucleus	69.2	65.6
KRH58277	Soybean	nucleus	72.57	64.42
KRH42160	Soybean	nucleus	72.57	64.42
Zm00001d006906_P010	Maize	mitochondrion	67.93	63.89
Zm00001d022189_P002	Maize	nucleus	66.24	61.81
Bra024276.1-P	Field mustard	nucleus	69.62	58.93
KXG39239	Sorghum	nucleus	57.38	57.63
TraesCS2D01G169700.5	Wheat	nucleus	66.24	57.09
Os07t0623300-01	Rice	nucleus	66.24	57.09
HORVU2Hr1G029630.1	Barley	plastid	30.38	52.94
TraesCS2B01G188600.1	Wheat	nucleus, plastid	59.49	51.84
AT5G64200.2	Thale cress	nucleus	66.24	51.82
TraesCS2A01G162700.3	Wheat	nucleus	49.37	49.16
CDX84503	Canola	nucleus	50.21	43.91
GSMUA_Achr4P13560_001	Banana	nucleus	28.69	31.34
GSMUA_Achr8P34280_001	Banana	nucleus	32.49	28.62
GSMUA_Achr9P21660_001	Banana	nucleus	29.11	28.16
GSMUA_Achr5P27470_001	Banana	nucleus	13.92	27.5
GSMUA_Achr1P17340_001	Banana	nucleus	29.54	26.12
CDY43799	Canola	vacuole	34.6	25.39
GSMUA_Achr5P27460_001	Banana	nucleus	9.28	23.4
GSMUA_Achr8P00210_001	Banana	mitochondrion, nucleus	10.13	22.43
Zm00001d029380_P002	Maize	cytosol, nucleus, plasma membrane	40.08	21.99
GSMUA_Achr8P00220_001	Banana	extracellular	14.35	15.38

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSMUA_Achr10G19090_001	EnsemblPlants:GSMUA_Achr10P19090_001	EnsemblPlants:GSMUA_Achr10T19090_001	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0RJI4
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23147	PANTHER:PTHR23147:SF42	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928	UniParc:UPI000295F483
SEG:seg	:	:	:	:	:

Description

RNA recognition motif containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G19090_001]

Coordinates

chr10:-:25604534..25609029

Molecular Weight (calculated)

27835.1 Da

IEP (calculated)

11.559

GRAVY (calculated)

-1.543

Length

237 amino acids

Sequence
(BLAST)

001: MSHFGRSGPP DIRDTYSLLV LNITFRTTAD DLFPLFDKYG EVVDVFIPRD RRTGDSRGFA FVRYKYADEA QKAVEKLDGR NVDGREIRVQ FAKYGPNAER
101: IHKGRIVEEV PRTSDRSRSR SPRPRYRDRE YKRRSRSRSR SRSRGRHERD RYHDRERDYR RSRSSRSPSV SPDYRRHSGR GKYDDERRSR SRSYSSGSPI
201: RRSPSPKRSS SPHSTPRKGS ADEKNHEPSS HSRSVSP

Best Arabidopsis Sequence Match ( AT5G64200.1 )
(BLAST)

001: MSHFGRSGPP DISDTYSLLV LNITFRTTAD DLYPLFAKYG KVVDVFIPRD RRTGDSRGFA FVRYKYKDEA HKAVERLDGR VVDGREITVQ FAKYGPNAEK
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE

Arabidopsis Description

SC35Serine/arginine-rich splicing factor SC35 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMG4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.