Factsheet for GSMUA_Achr9P21660_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P09660_001
GSMUA_Achr1P17340_001
GSMUA_Achr4P13560_001
GSMUA_Achr5P27460_001
GSMUA_Achr5P27470_001
GSMUA_Achr6P15450_001
GSMUA_Achr8P00210_001
GSMUA_Achr8P00220_001
GSMUA_Achr8P09080_001
GSMUA_Achr8P10150_001
GSMUA_Achr8P34280_001
GSMUA_Achr9P21660_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13570.1	GSMUA_Achr11P...	AT1G02840.1	18674533
AT3G13570.1	GSMUA_Achr8P10150_001	AT1G02840.1	18674533
AT3G13570.1	GSMUA_Achr11P...	AT1G09140.1	18674533
AT3G13570.1	GSMUA_Achr8P10150_001	AT1G09140.1	18674533
AT3G13570.1	GSMUA_Achr1P09660_001	AT1G23860.1	18674533
AT3G13570.1	GSMUA_AchrUn_...	AT1G23860.1	18674533
AT3G13570.1	GSMUA_Achr10P...	AT2G37340.1	18674533
AT3G13570.1	GSMUA_Achr6P15450_001	AT2G37340.1	18674533
AT3G13570.1	GSMUA_Achr8P09080_001	AT2G43370.1	15987817
AT3G13570.1	GSMUA_Achr4P13560_001	AT3G13570.1	18674533
AT3G13570.1	GSMUA_Achr9P21660_001	AT3G13570.1	18674533
AT3G13570.1	GSMUA_Achr1P17340_001	AT3G55460.1	18674533
AT3G13570.1	GSMUA_Achr8P34280_001	AT3G55460.1	18674533
AT3G13570.1	GSMUA_Achr11P...	AT3G61860.1	18674533
AT3G13570.1	GSMUA_Achr5P27460_001	AT5G18810.1	18674533
AT3G13570.1	GSMUA_Achr5P27470_001	AT5G18810.1	18674533
AT3G13570.1	GSMUA_Achr8P00210_001	AT5G18810.1	18674533
AT3G13570.1	GSMUA_Achr8P00220_001	AT5G18810.1	18674533
AT3G13570.1	GSMUA_Achr10P...	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0374575-01	Rice	nucleus	66.94	75.58
EER92211	Sorghum	nucleus	62.86	72.3
GSMUA_Achr4P13560_001	Banana	nucleus	63.67	71.89
Zm00001d022243_P002	Maize	nucleus	61.22	71.77
EER97602	Sorghum	nucleus	60.0	70.33
Zm00001d047401_P001	Maize	nucleus	61.63	69.91
Os07t0633200-02	Rice	nucleus	60.41	69.48
VIT_06s0004g00710.t01	Wine grape	nucleus	69.39	69.39
KRH16958	Soybean	nucleus	67.76	66.67
Zm00001d019443_P002	Maize	nucleus	28.57	66.04
TraesCS2D01G160400.1	Wheat	nucleus	54.69	65.37
TraesCS2A01G155100.1	Wheat	nucleus	54.69	65.37
Bra034794.1-P	Field mustard	nucleus	55.1	65.22
TraesCS2B01G180200.1	Wheat	nucleus	54.69	64.73
Zm00001d029629_P001	Maize	nucleus	11.84	64.44
KRH72576	Soybean	nucleus	66.53	64.43
CDY08473	Canola	nucleus	53.88	64.39
HORVU2Hr1G028210.9	Barley	nucleus	54.29	63.94
Zm00001d005285_P001	Maize	nucleus	36.73	62.94
Solyc01g005820.2.1	Tomato	nucleus	62.45	60.71
Zm00001d004470_P001	Maize	nucleus	27.35	60.36
PGSC0003DMT400081835	Potato	nucleus	60.82	60.08
Zm00001d016504_P001	Maize	nucleus	18.37	60.0
AT3G13570.1	Thale cress	nucleus	63.27	59.16
CDY01078	Canola	nucleus	53.88	55.46
PGSC0003DMT400010908	Potato	nucleus	62.86	55.0
Zm00001d010881_P001	Maize	nucleus	40.82	54.64
Zm00001d029305_P001	Maize	nucleus	34.69	51.83
AT1G55310.3	Thale cress	nucleus	61.22	50.17
KRH38014	Soybean	endoplasmic reticulum, nucleus	55.51	47.55
GSMUA_Achr5P27460_001	Banana	nucleus	16.73	43.62
Zm00001d015189_P001	Maize	nucleus	29.8	41.48
Zm00001d005739_P004	Maize	cytosol	18.37	40.91
Zm00001d012570_P002	Maize	extracellular	26.94	40.49
GSMUA_Achr8P00210_001	Banana	mitochondrion, nucleus	17.14	39.25
GSMUA_Achr1P17340_001	Banana	nucleus	42.86	39.18
GSMUA_Achr8P34280_001	Banana	nucleus	42.86	39.03
GSMUA_Achr5P27470_001	Banana	nucleus	17.96	36.67
Zm00001d043759_P001	Maize	cytosol	22.86	36.36
Zm00001d013841_P001	Maize	endoplasmic reticulum, extracellular, vacuole	28.16	31.94
Zm00001d010176_P001	Maize	cytosol	14.29	30.7
GSMUA_Achr10P...	Banana	nucleus	28.16	29.11
GSMUA_Achr2P00600_001	Banana	nucleus	27.76	27.53
GSMUA_Achr5P05380_001	Banana	nucleus	27.76	26.67
Zm00001d004722_P001	Maize	cytosol	11.43	26.42
GSMUA_Achr8P00220_001	Banana	extracellular	22.04	24.43

Protein Annotations

EnsemblPlants:GSMUA_Achr9P21660_001	EnsemblPlants:GSMUA_Achr9T21660_001	EnsemblPlantsGene:GSMUA_Achr9G21660_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR23147	PANTHER:PTHR23147:SF41	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000295B8E0	UniProt:M0U2C5	MapMan:16.4.6.2	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr9G21660_001]

Coordinates

chr9:-:26809640..26814719

Molecular Weight (calculated)

28603.3 Da

IEP (calculated)

11.870

GRAVY (calculated)

-1.555

Length

245 amino acids

Sequence
(BLAST)

001: MRGRSYSPSP PRGYGRRRRS PSPRGRYSSR GRDLPTSLLV RNLRRDCRAE DLRRPFGQFG PLKDIYLPRD YYTGEPRGFG FIQYVDPADA AEAKYQMDGQ
101: ILLGRELTVV FAEENRKKPS DMRARERRDR VYDSRRSPHN SRDPVHDYRR SPRRSRGPVH DSRRSPRQAR SPYYSHSRSR SRSRSYESPS SKRQHYSRSA
201: SPQDKTKHRE RSYSQSPAGS RSRSRSPEGL PSKPSRRERS LSVSG

Best Arabidopsis Sequence Match ( AT3G13570.1 )
(BLAST)

001: MRGRSYTPSP PRGYGRRGRS PSPRGRFGGS RDSDLPTSLL VRNLRHDCRQ EDLRRPFEQF GPVKDIYLPR DYYTGDPRGF GFIQFMDPAD AAEAKHQMDG
101: YLLLGRELTV VFAEENRKKP TEMRTRDRGG RSNRFQDRRR SPPRYSRSPP PRRGRRSRSR SRGYNSPPAK RHQSRSVSPQ DRRYEKERSY SRSPPHNGSR
201: VRSGSPGRVK SHSRSPRRSV SPRKNRSYTP EQARSQSPVP RQSRSPTPVP RGAQNGDRSP SQ

Arabidopsis Description

SCL30ASerine/arginine-rich SC35-like splicing factor SCL30A [Source:UniProtKB/Swiss-Prot;Acc:Q9LHP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.