CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72576	Soybean	nucleus	94.38	92.89
GSMUA_Achr4P13560_001	Banana	nucleus	63.86	73.27
Os03t0374575-01	Rice	nucleus	60.64	69.59
EER92211	Sorghum	nucleus	59.04	69.01
GSMUA_Achr9P21660_001	Banana	nucleus	66.67	67.76
EER97602	Sorghum	nucleus	56.63	67.46
Os07t0633200-02	Rice	nucleus	57.43	67.14
Zm00001d022243_P002	Maize	nucleus	56.22	66.99
Zm00001d029629_P001	Maize	nucleus	12.05	66.67
Zm00001d047401_P001	Maize	nucleus	57.43	66.2
TraesCS2A01G155100.1	Wheat	nucleus	53.01	64.39
TraesCS2D01G160400.1	Wheat	nucleus	53.01	64.39
Zm00001d019443_P002	Maize	nucleus	27.31	64.15
TraesCS2B01G180200.1	Wheat	nucleus	53.01	63.77
HORVU2Hr1G028210.9	Barley	nucleus	52.21	62.5
Zm00001d016504_P001	Maize	nucleus	18.07	60.0
Zm00001d005285_P001	Maize	nucleus	34.14	59.44
Zm00001d004470_P001	Maize	nucleus	26.1	58.56
Zm00001d029305_P001	Maize	nucleus	35.74	54.27
Zm00001d010881_P001	Maize	nucleus	36.95	50.27
KRH38014	Soybean	endoplasmic reticulum, nucleus	55.82	48.6
KRH02172	Soybean	nucleus	45.78	45.6
KRH50944	Soybean	nucleus	43.78	44.86
KRH73034	Soybean	nucleus	46.18	41.67
Zm00001d015189_P001	Maize	nucleus	29.32	41.48
KRH15102	Soybean	nucleus	44.98	41.33
Zm00001d012570_P002	Maize	extracellular	25.7	39.26
Zm00001d005739_P004	Maize	cytosol	16.87	38.18
Zm00001d043759_P001	Maize	cytosol	22.09	35.71
Zm00001d010176_P001	Maize	cytosol	14.86	32.46
KRH42160	Soybean	nucleus	34.14	31.84
KRH58277	Soybean	nucleus	34.14	31.84
Zm00001d013841_P001	Maize	endoplasmic reticulum, extracellular, vacuole	26.91	31.02
Zm00001d004722_P001	Maize	cytosol	12.45	29.25

Protein Annotations

EntrezGene:100775883	MapMan:16.4.6.2	Gene3D:3.30.70.330	EMBL:ACUP02009034	EnsemblPlantsGene:GLYMA_14G188200	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1MB58	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRH16958	ProteinID:KRH16958	ProteinID:KRH16958.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR23147	PANTHER:PTHR23147:SF41	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0001BA64B9	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:+:45295799..45298865

Molecular Weight (calculated)

29020.8 Da

IEP (calculated)

11.867

GRAVY (calculated)

-1.650

Length

249 amino acids

Sequence
(BLAST)

001: MRGRSYSPSP PPRHSRRGGG GRSPSPRGRY PPRPRQQDLP TSLLVRNLRH DCRPEDLRRP FGQFGPLKDI YLPKDYYTGE PRGFGFVQYV DPADAADAKY
101: HMDGQVLLGR ELTVVFAEEN RKKPTEMRTR ERRGRFYDRR RSPPRYSRSP RYSRSPPPRH RSRSRSRDYY SPPAKRREYS RSVSPEDRRY SRERSFSQHS
201: RERSYSRSPP YNGGSRSRSQ SPAKGPGQSR SPSPNRDGRE PARGRSPSQ

Best Arabidopsis Sequence Match ( AT3G13570.1 )
(BLAST)

001: MRGRSYTPSP PRGYGRRGRS PSPRGRFGGS RDSDLPTSLL VRNLRHDCRQ EDLRRPFEQF GPVKDIYLPR DYYTGDPRGF GFIQFMDPAD AAEAKHQMDG
101: YLLLGRELTV VFAEENRKKP TEMRTRDRGG RSNRFQDRRR SPPRYSRSPP PRRGRRSRSR SRGYNSPPAK RHQSRSVSPQ DRRYEKERSY SRSPPHNGSR
201: VRSGSPGRVK SHSRSPRRSV SPRKNRSYTP EQARSQSPVP RQSRSPTPVP RGAQNGDRSP SQ

Arabidopsis Description

SCL30ASerine/arginine-rich SC35-like splicing factor SCL30A [Source:UniProtKB/Swiss-Prot;Acc:Q9LHP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.