CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16958	Soybean	nucleus	92.89	94.38
GSMUA_Achr4P13560_001	Banana	nucleus	63.24	73.73
Os03t0374575-01	Rice	nucleus	59.68	69.59
EER92211	Sorghum	nucleus	58.1	69.01
GSMUA_Achr9P21660_001	Banana	nucleus	64.43	66.53
Zm00001d047401_P001	Maize	nucleus	56.52	66.2
Os07t0633200-02	Rice	nucleus	55.73	66.2
EER97602	Sorghum	nucleus	54.55	66.03
Zm00001d022243_P002	Maize	nucleus	54.55	66.03
Zm00001d029629_P001	Maize	nucleus	11.46	64.44
TraesCS2A01G155100.1	Wheat	nucleus	51.38	63.41
TraesCS2D01G160400.1	Wheat	nucleus	51.38	63.41
TraesCS2B01G180200.1	Wheat	nucleus	51.38	62.8
Zm00001d019443_P002	Maize	nucleus	26.09	62.26
HORVU2Hr1G028210.9	Barley	nucleus	50.59	61.54
Zm00001d005285_P001	Maize	nucleus	33.2	58.74
Zm00001d016504_P001	Maize	nucleus	17.39	58.67
Zm00001d004470_P001	Maize	nucleus	25.3	57.66
Zm00001d029305_P001	Maize	nucleus	33.99	52.44
Zm00001d010881_P001	Maize	nucleus	35.97	49.73
KRH38014	Soybean	endoplasmic reticulum, nucleus	54.15	47.9
KRH02172	Soybean	nucleus	45.06	45.6
KRH50944	Soybean	nucleus	43.08	44.86
KRH15102	Soybean	nucleus	44.66	41.7
KRH73034	Soybean	nucleus	45.45	41.67
Zm00001d015189_P001	Maize	nucleus	28.46	40.91
Zm00001d012570_P002	Maize	extracellular	24.9	38.65
Zm00001d005739_P004	Maize	cytosol	16.21	37.27
Zm00001d043759_P001	Maize	cytosol	21.34	35.06
Zm00001d013841_P001	Maize	endoplasmic reticulum, extracellular, vacuole	27.27	31.94
Zm00001d010176_P001	Maize	cytosol	14.23	31.58
KRH58277	Soybean	nucleus	32.81	31.09
KRH42160	Soybean	nucleus	32.81	31.09
Zm00001d004722_P001	Maize	cytosol	11.86	28.3

Protein Annotations

EntrezGene:100779321	MapMan:16.4.6.2	Gene3D:3.30.70.330	EMBL:ACUP02001223	EnsemblPlantsGene:GLYMA_02G220800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1JH68	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRH72576	ProteinID:KRH72576	ProteinID:KRH72576.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR23147	PANTHER:PTHR23147:SF41	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0001E2443B	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:40865343..40868569

Molecular Weight (calculated)

29639.5 Da

IEP (calculated)

11.942

GRAVY (calculated)

-1.645

Length

253 amino acids

Sequence
(BLAST)

001: MRGRSYSPSP PPPRYSRRGG GRSPSPRGRY PPRPRQQDLP TSLLVRNLRH DCRPEDLRRP FGQFGPLKDI YLPKDYYTGE PRGFGFVQFV DPADAADAKY
101: HMDGQVLLGR ELTVVFAEEN RKKPTEMRTR ERRGRFSDRR RSPPRYSRSP RYSRSPRYSR SPPPRHRSRS HSRDYYSPKR REYSRSVSPE GRRYSRERSY
201: SQHNRERSFS RSPPYNGGSR SRSQSPAKGP GRSRSPSLNR DEREPARGRS PSQ

Best Arabidopsis Sequence Match ( AT3G13570.1 )
(BLAST)

001: MRGRSYTPSP PRGYGRRGRS PSPRGRFGGS RDSDLPTSLL VRNLRHDCRQ EDLRRPFEQF GPVKDIYLPR DYYTGDPRGF GFIQFMDPAD AAEAKHQMDG
101: YLLLGRELTV VFAEENRKKP TEMRTRDRGG RSNRFQDRRR SPPRYSRSPP PRRGRRSRSR SRGYNSPPAK RHQSRSVSPQ DRRYEKERSY SRSPPHNGSR
201: VRSGSPGRVK SHSRSPRRSV SPRKNRSYTP EQARSQSPVP RQSRSPTPVP RGAQNGDRSP SQ

Arabidopsis Description

SCL30ASerine/arginine-rich SC35-like splicing factor SCL30A [Source:UniProtKB/Swiss-Prot;Acc:Q9LHP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.