Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
endoplasmic reticulum: 27224218 endoplasmic reticulum: 28499913 nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH42160 | Soybean | nucleus | 98.13 | 98.13 |
| VIT_12s0142g00110.t01 | Wine grape | nucleus | 74.53 | 78.04 |
| HORVU2Hr1G029640.1 | Barley | mitochondrion | 40.45 | 77.7 |
| Solyc01g105140.2.1 | Tomato | nucleus | 71.16 | 74.8 |
| PGSC0003DMT400032709 | Potato | nucleus | 70.41 | 74.02 |
| GSMUA_Achr10P... | Banana | nucleus | 64.42 | 72.57 |
| KXG36736 | Sorghum | nucleus | 65.54 | 70.0 |
| Bra024276.1-P | Field mustard | nucleus | 71.16 | 67.86 |
| Zm00001d006906_P010 | Maize | mitochondrion | 64.04 | 67.86 |
| Zm00001d022189_P002 | Maize | nucleus | 61.42 | 64.57 |
| TraesCS2D01G169700.5 | Wheat | nucleus | 66.29 | 64.36 |
| Os07t0623300-01 | Rice | nucleus | 64.42 | 62.55 |
| AT5G64200.2 | Thale cress | nucleus | 68.91 | 60.73 |
| KXG39239 | Sorghum | nucleus | 52.81 | 59.75 |
| TraesCS2A01G162700.3 | Wheat | nucleus | 52.81 | 59.24 |
| TraesCS2B01G188600.1 | Wheat | nucleus, plastid | 59.93 | 58.82 |
| HORVU2Hr1G029630.1 | Barley | plastid | 26.22 | 51.47 |
| CDX84503 | Canola | nucleus | 50.19 | 49.45 |
| KRH16958 | Soybean | nucleus | 31.84 | 34.14 |
| KRH72576 | Soybean | nucleus | 31.09 | 32.81 |
| KRH02172 | Soybean | nucleus | 29.59 | 31.6 |
| KRH50944 | Soybean | nucleus | 28.09 | 30.86 |
| CDY43799 | Canola | vacuole | 37.08 | 30.65 |
| KRH15102 | Soybean | nucleus | 29.21 | 28.78 |
| KRH73034 | Soybean | nucleus | 29.59 | 28.62 |
| Zm00001d029380_P002 | Maize | cytosol, nucleus, plasma membrane | 38.58 | 23.84 |
| KRH38014 | Soybean | endoplasmic reticulum, nucleus | 24.34 | 22.73 |
Protein Annotations
| EntrezGene:100804370 | Gene3D:3.30.70.330 | MapMan:35.1 | EMBL:ACUP02003245 | EnsemblPlantsGene:GLYMA_05G117600 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | UniProt:I1K2P0 | InterPro:IPR000504 | InterPro:IPR012677 |
| EnsemblPlants:KRH58277 | ProteinID:KRH58277 | ProteinID:KRH58277.1 | ProteinID:KRH58278.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF42 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk |
| SMART:SM00360 | SMART:SM00361 | SUPFAM:SSF54928 | UniParc:UPI000233A6D7 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr5:+:31064474..31068470
Molecular Weight (calculated)
31258.1 Da
IEP (calculated)
11.898
GRAVY (calculated)
-1.638
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHFGRSGPP DISDTYSLLV LNITFRTTAD DLFPLFDKYG KVVDIFIPKD RRTGESRGFA FVRYKYADEA QKAVERLDGR MVDGREITVQ FAKYGPNAER
101: IHKGRIIETS PRSRRSRSRS PRKRHRDDYR DRDYRRRSRS RSYDRYERDR HRGRDKDYRR RSRSRSASLD YKGRGRGRYD DERNSRSRSR SVDSRSPARR
201: SPSPRRSPSP QRSTSPQRST SPRKSPRGES PANRSREERS PTPRSVSPRG RPDASRSPSP RNSNGDE
101: IHKGRIIETS PRSRRSRSRS PRKRHRDDYR DRDYRRRSRS RSYDRYERDR HRGRDKDYRR RSRSRSASLD YKGRGRGRYD DERNSRSRSR SVDSRSPARR
201: SPSPRRSPSP QRSTSPQRST SPRKSPRGES PANRSREERS PTPRSVSPRG RPDASRSPSP RNSNGDE
001: MSHFGRSGPP DISDTYSLLV LNITFRTTAD DLYPLFAKYG KVVDVFIPRD RRTGDSRGFA FVRYKYKDEA HKAVERLDGR VVDGREITVQ FAKYGPNAEK
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE
Arabidopsis Description
SC35Serine/arginine-rich splicing factor SC35 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMG4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.