Factsheet for Bra024276.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000304.1-P
Bra014741.1-P
Bra023114.1-P
Bra030819.1-P
Bra039394.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64200.2	Bra030819.1-P	AT1G53720.1	16497658
AT5G64200.2	Bra023114.1-P	AT2G37340.1	18674533
AT5G64200.2	Bra000304.1-P	AT2G43370.1	15987817
AT5G64200.2	Bra039394.1-P	AT3G13570.1	18674533
AT5G64200.2	Bra014741.1-P	AT3G55460.1	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G64200.2	Thale cress	nucleus	84.64	78.22
HORVU2Hr1G029640.1	Barley	mitochondrion	37.14	74.82
KRH58277	Soybean	nucleus	67.86	71.16
KRH42160	Soybean	nucleus	67.5	70.79
GSMUA_Achr10P...	Banana	nucleus	58.93	69.62
CDX84503	Canola	nucleus	66.07	68.27
VIT_12s0142g00110.t01	Wine grape	nucleus	60.71	66.67
KXG36736	Sorghum	nucleus	59.29	66.4
Solyc01g105140.2.1	Tomato	nucleus	58.57	64.57
PGSC0003DMT400032709	Potato	nucleus	57.86	63.78
Zm00001d006906_P010	Maize	mitochondrion	57.14	63.49
Zm00001d022189_P002	Maize	nucleus	55.36	61.02
Os07t0623300-01	Rice	nucleus	58.93	60.0
TraesCS2D01G169700.5	Wheat	nucleus	57.86	58.91
KXG39239	Sorghum	nucleus	46.43	55.08
TraesCS2B01G188600.1	Wheat	nucleus, plastid	52.5	54.04
TraesCS2A01G162700.3	Wheat	nucleus	45.36	53.36
HORVU2Hr1G029630.1	Barley	plastid	24.29	50.0
CDY43799	Canola	vacuole	53.57	46.44
Bra034794.1-P	Field mustard	nucleus	25.0	33.82
Bra014741.1-P	Field mustard	mitochondrion, nucleus, plastid	32.86	31.19
Bra039394.1-P	Field mustard	nucleus	28.21	30.04
Bra037991.1-P	Field mustard	nucleus	23.57	26.72
Bra011910.1-P	Field mustard	nucleus	28.57	25.08
Zm00001d029380_P002	Maize	cytosol, nucleus, plasma membrane	36.79	23.84
Bra030870.1-P	Field mustard	plastid	8.57	13.26

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra024276	EnsemblPlants:Bra024276.1	EnsemblPlants:Bra024276.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005737	GO:GO:0005829	GO:GO:0016020
GO:GO:0016607	InterPro:IPR000504	InterPro:IPR012677	UniProt:M4E672	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR23147	PANTHER:PTHR23147:SF42	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000253F39F	SEG:seg	:	:	:

Description

AT5G64200 (E=3e-057) ATSC35, SC35 | ATSC35; RNA binding / nucleic acid binding / nucleotide binding

Coordinates

chrA06:-:14671390..14672915

Molecular Weight (calculated)

32791.1 Da

IEP (calculated)

12.047

GRAVY (calculated)

-1.613

Length

280 amino acids

Sequence
(BLAST)

001: MSHFGRSGPP DISDTYSLLV LNITFRTTAD DLYPLFAKYG KVVDVFIPRD RRTGDSRGFA FVRYKYKDEA HKAVERLDGR EVDGREITVQ FAKYGPNAEK
101: ISKGRVVEPP PRSRRSRSRS PRRSRSPYRR RSPRRSRSPR RRSRDDYRER DYRKRSRSRS NERRDRHHDK DRDYRRRSRS RSASPDDKRR VRGRYDDERR
201: SRSRSLSASP ARRSRSPISA SPLKASPERR SKERSLTPAS RSRSPRSPSL EKASPERKSN DRSPSPRDTA RSQSPNAEVG

Best Arabidopsis Sequence Match ( AT5G64200.1 )
(BLAST)

001: MSHFGRSGPP DISDTYSLLV LNITFRTTAD DLYPLFAKYG KVVDVFIPRD RRTGDSRGFA FVRYKYKDEA HKAVERLDGR VVDGREITVQ FAKYGPNAEK
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE

Arabidopsis Description

SC35Serine/arginine-rich splicing factor SC35 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMG4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.