CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

nucleus 1
plastid 3
extracellular 2
endoplasmic reticulum 2
vacuole 4
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	vacuole
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76092
CDX79732
CDX83484
CDY02941
CDY07084
CDY10512
CDY14697
CDY22251
CDY23361
CDY24176
CDY44222
CDY46773
CDY72459

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64200.2	CDY10512	AT1G53720.1	16497658
AT5G64200.2	CDY72459	AT1G53720.1	16497658
AT5G64200.2	CDX79732	AT2G37340.1	18674533
AT5G64200.2	CDY46773	AT2G37340.1	18674533
AT5G64200.2	CDX83484	AT2G43370.1	15987817
AT5G64200.2	CDY14697	AT2G43370.1	15987817
AT5G64200.2	CDY22251	AT2G43370.1	15987817
AT5G64200.2	CDY23361	AT2G43370.1	15987817
AT5G64200.2	CDY44222	AT2G43370.1	15987817
AT5G64200.2	CDY07084	AT3G13570.1	18674533
AT5G64200.2	CDY24176	AT3G13570.1	18674533
AT5G64200.2	CDX76092	AT3G55460.1	18674533
AT5G64200.2	CDY02941	AT3G55460.1	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84503	Canola	nucleus	69.35	82.66
Bra024276.1-P	Field mustard	nucleus	46.44	53.57
AT5G64200.2	Thale cress	nucleus	35.29	37.62
VIT_18s0001g05550.t01	Wine grape	nucleus	29.72	37.35
KRH58277	Soybean	nucleus	30.65	37.08
KRH42160	Soybean	nucleus	30.65	37.08
GSMUA_Achr10P...	Banana	nucleus	25.39	34.6
PGSC0003DMT400045694	Potato	nucleus	27.55	34.5
Solyc04g074040.2.1	Tomato	nucleus	27.24	34.11
Solyc01g105140.2.1	Tomato	nucleus	26.63	33.86
PGSC0003DMT400032709	Potato	nucleus	26.63	33.86
VIT_12s0142g00110.t01	Wine grape	nucleus	25.08	31.76
KXG36736	Sorghum	nucleus	24.15	31.2
TraesCS2A01G162700.3	Wheat	nucleus	21.98	29.83
Os07t0623300-01	Rice	nucleus	25.39	29.82
TraesCS2D01G169700.5	Wheat	nucleus	25.39	29.82
TraesCS2B01G188600.1	Wheat	nucleus, plastid	24.77	29.41
Zm00001d006906_P010	Maize	mitochondrion	22.91	29.37
Zm00001d022189_P002	Maize	nucleus	21.05	26.77
KXG39239	Sorghum	nucleus	19.2	26.27
HORVU2Hr1G029640.1	Barley	mitochondrion	9.91	23.02
CDY08473	Canola	nucleus	12.07	19.02
CDY24043	Canola	nucleus	16.41	18.66
CDY24176	Canola	nucleus	14.86	18.39
HORVU2Hr1G029630.1	Barley	plastid	7.74	18.38
CDY07084	Canola	nucleus	14.86	18.25
CDY33060	Canola	nucleus	15.79	17.77
CDY02941	Canola	nucleus	15.17	17.63
CDX76092	Canola	plastid	15.17	17.38
CDY26110	Canola	mitochondrion, nucleus	14.86	16.16
CDY01078	Canola	nucleus	11.76	15.97
CDY08236	Canola	nucleus	15.17	15.41
CDY10571	Canola	nucleus	14.86	14.24
CDY02449	Canola	nucleus	8.98	12.5
Zm00001d029380_P002	Maize	cytosol, nucleus, plasma membrane	15.48	11.57

Protein Annotations

EnsemblPlants:CDY43799	EnsemblPlantsGene:GSBRNA2T00077304001	PANTHER:PTHR23147	PANTHER:PTHR23147:SF42	ProteinID:CDY43799	ProteinID:CDY43799.1
SEG:seg	UniParc:UPI0004EEF021	UniProt:A0A078I2H1	MapMan:35.2	:	:

Description

BnaA06g23350DBnaA06g23350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I2H1]

Coordinates

chrLK032568:-:190226..192611

Molecular Weight (calculated)

35755.8 Da

IEP (calculated)

11.560

GRAVY (calculated)

-0.630

Length

323 amino acids

Sequence
(BLAST)

001: MALESRSFLI IGPSIAPSLL GFVISQATRN LISLPLSPPA VKPCRTSEGQ VRRTSATPTL FSSSTSPSVR LQMIFILYSR STGRSSMSSS PEIEGLVIRV
101: VLHLFDISIK MKLTKLWKGL MDERLMAEKS LFSLLNTALM QRRFQKEELW NHLQGHEGQE AVVLEGAVAL IDAVVLGEAA VPAGGPEMIT GKETTGRGAE
201: VEAMKGRDRH HDKDRDYRRR SRSRSASPDD KRRVRGRYDD ERRSRSRSLS ASPARRSRSP ISASPLKASP ERRSKERSLT PASRSRSPRS PSLEKASPER
301: KSNDRSPSPR DTARSQSPNA EVG

Best Arabidopsis Sequence Match ( AT5G64200.1 )
(BLAST)

001: MSHFGRSGPP DISDTYSLLV LNITFRTTAD DLYPLFAKYG KVVDVFIPRD RRTGDSRGFA FVRYKYKDEA HKAVERLDGR VVDGREITVQ FAKYGPNAEK
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE

Arabidopsis Description

SC35Serine/arginine-rich splicing factor SC35 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMG4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.