Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY33060 | Canola | nucleus | 95.77 | 94.77 |
| Bra037991.1-P | Field mustard | nucleus | 79.58 | 91.5 |
| AT1G55310.3 | Thale cress | nucleus | 84.15 | 79.93 |
| CDY26110 | Canola | mitochondrion, nucleus | 80.63 | 77.1 |
| CDY24176 | Canola | nucleus | 69.72 | 75.86 |
| CDY07084 | Canola | nucleus | 69.72 | 75.29 |
| CDY08236 | Canola | nucleus | 81.69 | 72.96 |
| PGSC0003DMT400081835 | Potato | nucleus | 58.1 | 66.53 |
| Solyc01g005820.2.1 | Tomato | nucleus | 58.1 | 65.48 |
| CDY08473 | Canola | nucleus | 46.48 | 64.39 |
| PGSC0003DMT400010908 | Potato | nucleus | 58.45 | 59.29 |
| CDY01078 | Canola | nucleus | 47.89 | 57.14 |
| CDY02449 | Canola | nucleus | 39.44 | 48.28 |
| KRH38014 | Soybean | endoplasmic reticulum, nucleus | 48.59 | 48.25 |
| CDY02941 | Canola | nucleus | 41.55 | 42.45 |
| CDX76092 | Canola | plastid | 41.9 | 42.2 |
| CDY10571 | Canola | nucleus | 46.13 | 38.87 |
| CDX84503 | Canola | nucleus | 23.24 | 24.35 |
| CDY43799 | Canola | vacuole | 18.66 | 16.41 |
Protein Annotations
| MapMan:16.4.6.2 | Gene3D:3.30.70.330 | GO:A0A078GHF6 | UniProt:A0A078GHF6 | EnsemblPlants:CDY24043 | ProteinID:CDY24043 |
| ProteinID:CDY24043.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00024573001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23147 |
| PANTHER:PTHR23147:SF41 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE55D2 |
| SEG:seg | : | : | : | : | : |
Description
BnaA06g00410DBnaA06g00410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GHF6]
Coordinates
chrLK032153:-:24276..27006
Molecular Weight (calculated)
32555.1 Da
IEP (calculated)
12.275
GRAVY (calculated)
-1.506
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGRSYTPSP PRGAYGRRGR SPSPRGRYGG GRSSRDLPTS LLVRNLRHDC RQDDLRRSFE QFGPLKDIYL PRDYYTGNPR GFGFVQFVDP ADAAEAKYHM
101: DGYVLHGREL TVVFAEENRK KPIEMRARER GGVRRRSPPR YSRSPPRRRG RSRSRSGDYY SPPRRHHPRS ISPRGERYDR GRSYSRSPAY NGSRGRSVSP
201: ARGKSRSISR SPRRSISRSP RGGGISPSPR RSISRSPSPR RSISRSPRGN RSPSPRRSRS YTPEQARSRS PPRGEQYEDR SPSQ
101: DGYVLHGREL TVVFAEENRK KPIEMRARER GGVRRRSPPR YSRSPPRRRG RSRSRSGDYY SPPRRHHPRS ISPRGERYDR GRSYSRSPAY NGSRGRSVSP
201: ARGKSRSISR SPRRSISRSP RGGGISPSPR RSISRSPSPR RSISRSPRGN RSPSPRRSRS YTPEQARSRS PPRGEQYEDR SPSQ
001: MRGRSYTPSP PRGYGRRGRS PSPRGRYGGR SRDLPTSLLV RNLRHDCRQE DLRKSFEQFG PVKDIYLPRD YYTGDPRGFG FVQFMDPADA ADAKHHMDGY
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPSPRRS ISRSPRRSRS PSPKRNRSVS PRRSISRSPR RSRSPRRSRR SYTPEPARSR SQSPHGGQYD EDRSPSQ
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPSPRRS ISRSPRRSRS PSPKRNRSVS PRRSISRSPR RSRSPRRSRR SYTPEPARSR SQSPHGGQYD EDRSPSQ
Arabidopsis Description
SR33SC35-like splicing factor 33 [Source:TAIR;Acc:AT1G55310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.