Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76092 | Canola | plastid | 99.28 | 97.87 |
| Bra014741.1-P | Field mustard | mitochondrion, nucleus, plastid | 98.56 | 92.88 |
| AT3G55460.1 | Thale cress | mitochondrion, nucleus | 84.53 | 89.69 |
| HORVU6Hr1G061320.1 | Barley | mitochondrion | 34.53 | 68.09 |
| KRH15102 | Soybean | nucleus | 64.03 | 65.68 |
| KRH73034 | Soybean | nucleus | 64.03 | 64.49 |
| EES16196 | Sorghum | nucleus | 60.43 | 64.12 |
| EES10309 | Sorghum | nucleus | 61.15 | 62.96 |
| GSMUA_Achr8P34280_001 | Banana | nucleus | 60.79 | 62.83 |
| Os02t0252100-02 | Rice | nucleus | 59.35 | 62.26 |
| Os12t0572400-01 | Rice | nucleus | 58.63 | 61.98 |
| HORVU7Hr1G118660.4 | Barley | nucleus | 48.92 | 59.91 |
| TraesCS4B01G025600.1 | Wheat | nucleus | 56.83 | 58.74 |
| TraesCS4A01G289300.1 | Wheat | nucleus | 56.12 | 58.65 |
| HORVU4Hr1G003820.8 | Barley | nucleus | 56.12 | 58.65 |
| HORVU4Hr1G058060.2 | Barley | mitochondrion, nucleus | 48.2 | 58.26 |
| GSMUA_Achr1P17340_001 | Banana | nucleus | 56.12 | 58.21 |
| TraesCS4D01G022700.1 | Wheat | nucleus | 56.83 | 58.09 |
| Zm00001d048609_P001 | Maize | nucleus, plastid | 59.35 | 57.29 |
| HORVU2Hr1G073490.2 | Barley | cytosol, nucleus | 33.81 | 56.29 |
| TraesCS5D01G093200.1 | Wheat | nucleus, plastid | 58.27 | 54.73 |
| TraesCS5B01G087000.2 | Wheat | nucleus, plastid | 58.27 | 54.73 |
| TraesCS5A01G079000.1 | Wheat | nucleus | 57.91 | 54.39 |
| HORVU5Hr1G021180.4 | Barley | nucleus, plastid | 57.91 | 53.49 |
| HORVU6Hr1G034010.3 | Barley | nucleus | 50.36 | 53.44 |
| VIT_13s0019g01060.t01 | Wine grape | nucleus | 65.47 | 51.56 |
| CDY08473 | Canola | nucleus | 33.81 | 45.85 |
| CDY24176 | Canola | nucleus | 42.09 | 44.83 |
| CDY07084 | Canola | nucleus | 42.09 | 44.49 |
| Zm00001d030739_P002 | Maize | mitochondrion, nucleus, plastid | 57.91 | 43.63 |
| CDY24043 | Canola | nucleus | 42.45 | 41.55 |
| CDY33060 | Canola | nucleus | 41.73 | 40.42 |
| CDY01078 | Canola | nucleus | 34.17 | 39.92 |
| CDY02449 | Canola | nucleus | 32.73 | 39.22 |
| CDY26110 | Canola | mitochondrion, nucleus | 39.93 | 37.37 |
| CDY08236 | Canola | nucleus | 40.65 | 35.53 |
| CDY10571 | Canola | nucleus | 37.05 | 30.56 |
| CDX84503 | Canola | nucleus | 24.82 | 25.46 |
| Os11t0704700-01 | Rice | nucleus | 41.73 | 22.7 |
| TraesCS4A01G176000.13 | Wheat | nucleus | 51.08 | 15.6 |
| TraesCS4D01G136700.4 | Wheat | nucleus | 49.64 | 15.21 |
| CDY43799 | Canola | vacuole | 17.63 | 15.17 |
| TraesCS4B01G141700.1 | Wheat | nucleus | 35.97 | 12.59 |
| HORVU4Hr1G027820.11 | Barley | nucleus, plastid | 49.28 | 12.52 |
Protein Annotations
| EnsemblPlants:CDY02941 | EnsemblPlantsGene:GSBRNA2T00115213001 | Gene3D:3.30.70.330 | GO:A0A078EP52 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR23147 | PANTHER:PTHR23147:SF1 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDY02941 | ProteinID:CDY02941.1 |
| SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EF4BEA | MapMan:16.4.6.2 | : |
Description
BnaC04g25450D
Coordinates
chrLK031938:+:722308..724939
Molecular Weight (calculated)
31536.5 Da
IEP (calculated)
11.906
GRAVY (calculated)
-1.513
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRRYSPPYY SPPRRGYGGR GRSPPPPPRR GYGGGGRKGS SHGSLLVRNI PLDCRPEELR VPFERFGPVR DVYIPRDYYS GEPRGFAFVE FVDAYDAGEA
101: QRSMNRRIFG GREITVVVAS ESRKRPEEMR VKTRTRSREP SGSRGRSHGR SRSRSISRSR SPRRPSDSRN RRRSRSYSPA PRRRGADYSA SPRRRQEERP
201: RSPLRSPPRG EGDAKYSRRS YSPGHEGAAA AAGDRDANGD NETREKPDYE PEERRRGGRE VSRSPSGSRS RSVEASPR
101: QRSMNRRIFG GREITVVVAS ESRKRPEEMR VKTRTRSREP SGSRGRSHGR SRSRSISRSR SPRRPSDSRN RRRSRSYSPA PRRRGADYSA SPRRRQEERP
201: RSPLRSPPRG EGDAKYSRRS YSPGHEGAAA AAGDRDANGD NETREKPDYE PEERRRGGRE VSRSPSGSRS RSVEASPR
001: MRRYSPPYYS PPRRGYGGRG RSPPPPPPRR GYGGGGGGGG RRGSSHGSLL VRNIPLDCRP EELREPFERF GPVRDVYIPR DYYSGQPRGF AFVEFVDAYD
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR
Arabidopsis Description
SCL30Serine/arginine-rich SC35-like splicing factor SCL30 [Source:UniProtKB/Swiss-Prot;Acc:Q8L3X8]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.