Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G136700.4 | Wheat | nucleus | 65.72 | 79.27 |
| TraesCS4A01G176000.13 | Wheat | nucleus | 65.9 | 79.23 |
| TraesCS4B01G141700.1 | Wheat | nucleus | 54.39 | 74.94 |
| HORVU6Hr1G061320.1 | Barley | mitochondrion | 7.59 | 58.87 |
| HORVU7Hr1G118660.4 | Barley | nucleus | 11.33 | 54.63 |
| HORVU4Hr1G058060.2 | Barley | mitochondrion, nucleus | 11.24 | 53.48 |
| EES10309 | Sorghum | nucleus | 13.07 | 52.96 |
| GSMUA_Achr8P34280_001 | Banana | nucleus | 12.98 | 52.79 |
| HORVU4Hr1G003820.8 | Barley | nucleus | 12.61 | 51.88 |
| GSMUA_Achr1P17340_001 | Banana | nucleus | 12.52 | 51.12 |
| HORVU6Hr1G034010.3 | Barley | nucleus | 11.88 | 49.62 |
| HORVU5Hr1G021180.4 | Barley | nucleus, plastid | 13.62 | 49.5 |
| CDY02941 | Canola | nucleus | 12.52 | 49.28 |
| KRH15102 | Soybean | nucleus | 12.07 | 48.71 |
| CDX76092 | Canola | plastid | 12.52 | 48.58 |
| HORVU2Hr1G073490.2 | Barley | cytosol, nucleus | 7.4 | 48.5 |
| KRH73034 | Soybean | nucleus | 12.16 | 48.19 |
| AT3G55460.1 | Thale cress | mitochondrion, nucleus | 11.43 | 47.71 |
| Zm00001d048609_P001 | Maize | nucleus, plastid | 12.52 | 47.57 |
| Bra014741.1-P | Field mustard | mitochondrion, nucleus, plastid | 12.43 | 46.1 |
| HORVU7Hr1G080760.3 | Barley | mitochondrion | 6.58 | 42.86 |
| HORVU1Hr1G043200.4 | Barley | mitochondrion, nucleus | 7.13 | 41.94 |
| VIT_13s0019g01060.t01 | Wine grape | nucleus | 13.25 | 41.08 |
| HORVU2Hr1G028210.9 | Barley | nucleus | 6.86 | 36.06 |
| HORVU4Hr1G045510.3 | Barley | nucleus | 6.67 | 30.54 |
| HORVU2Hr1G029640.1 | Barley | mitochondrion | 3.47 | 27.34 |
| Os11t0704700-01 | Rice | nucleus | 11.52 | 24.66 |
| HORVU2Hr1G029630.1 | Barley | plastid | 2.56 | 20.59 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G027820.11 | EnsemblPlantsGene:HORVU4Hr1G027820 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR23147 | PANTHER:PTHR23147:SF1 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000B4873A5 | UniProt:A0A287NNG7 | MapMan:16.4.6.2 | : | : |
Description
No Description!
Coordinates
chrchr4H:-:170733045..170746865
Molecular Weight (calculated)
125216.0 Da
IEP (calculated)
10.225
GRAVY (calculated)
-1.877
Length
1094 amino acids
Sequence
(BLAST)
(BLAST)
0001: FSLTIFLPRV RAAPAPVPVA VRPAPAFSTA PHRSRRRRRW RCTILVPRAM ARSRSPKGEG DSRRRSPPRR SSGEQGGRKE QGPVSLLVRN IPHNCRSEDL
0101: RVPFEKFGPV WDVHMPKDYY SGEPKGFAFI EFSDPHDASE AQYHMNSKLF CGREIKVVPA TAKRKRPEDM RRQTGVRVHS GSKRRHLSRH GRSRSRSHSR
0201: SPRHGGRDRS RSHSPAPRRR GDYSASPKRK EECQAKSSGQ SKEHDNDKKL GPCTPGDRSE HHDTDNDSNE RQATPDYSAV PKRKEECQTK SPKQPNEHDV
0301: DKKCVSFSPD KNNCRDADNG HNERDDYSTS SKKKGERLAR SPRLSKEHGK DKKQRSYSRD DRSDCRDADN GFKESPATTD GKGSSPHQKS PRSSSGSHSR
0401: RRDAYSAPPK GKEERREQSP RQSKEHDKHR KWRSNTPDDR NDCRHVDHSH NDSNLHVDRK PVTPDGEGSH ACRRSPRPSS GSHSRRRDDC SASPKRKEAR
0501: WAKSPKQSTE HEDENRRSCS PDDINGRHNS VDCYKKKRDG YSASPKIKEC RLESPQPTKE REDKKRSYAP DDGIDRTDAD NGYNERRAGP DCASQKRMEK
0601: PSQANSQSQS KEHDNDKKHR SYTHIDGKEL RDAHNGSKER RKDDSAAGKR KEERQASLPR QSKEYDEHKK SGSYTRDNRN DYRDADNGSK ERQKNYPAAG
0701: KRKEEHQASL PRQSKEHDEH KKRGSYTCGN RNEHRDADNG SKERQKDYPT AGKRKEEHQA SLPRQSKEHD EHKKRGSYTC DDRNEHRDAD NGSKEQKDYS
0801: AAGKRKEEHQ ASLPRQSKEH GAHKKRGSYT RDDRNDLRGA DKGSKERKDY PAAGKRKEEH QASLPRQSKE HDEHKKRGSY TRDDRNDLRD ADNSSKERKD
0901: YAAAGMRKEE RQASLPRQSK EHDEHKGRGS YTRNDRDDPR DVDNGSKESR NDYSAAQKGT EDHRAKSSRQ SEEHDNDNKR GSYTVDDRSH HCDADNGSRE
1001: KRGDFSDSGQ RKEEYRGKSL RQLKEHGDNK KRGSDTPADR NDLRDVDNGC NEKLATHGGS PCPGQRSPLP SCGSGSRSED KTLLDATTDR IMEM
0101: RVPFEKFGPV WDVHMPKDYY SGEPKGFAFI EFSDPHDASE AQYHMNSKLF CGREIKVVPA TAKRKRPEDM RRQTGVRVHS GSKRRHLSRH GRSRSRSHSR
0201: SPRHGGRDRS RSHSPAPRRR GDYSASPKRK EECQAKSSGQ SKEHDNDKKL GPCTPGDRSE HHDTDNDSNE RQATPDYSAV PKRKEECQTK SPKQPNEHDV
0301: DKKCVSFSPD KNNCRDADNG HNERDDYSTS SKKKGERLAR SPRLSKEHGK DKKQRSYSRD DRSDCRDADN GFKESPATTD GKGSSPHQKS PRSSSGSHSR
0401: RRDAYSAPPK GKEERREQSP RQSKEHDKHR KWRSNTPDDR NDCRHVDHSH NDSNLHVDRK PVTPDGEGSH ACRRSPRPSS GSHSRRRDDC SASPKRKEAR
0501: WAKSPKQSTE HEDENRRSCS PDDINGRHNS VDCYKKKRDG YSASPKIKEC RLESPQPTKE REDKKRSYAP DDGIDRTDAD NGYNERRAGP DCASQKRMEK
0601: PSQANSQSQS KEHDNDKKHR SYTHIDGKEL RDAHNGSKER RKDDSAAGKR KEERQASLPR QSKEYDEHKK SGSYTRDNRN DYRDADNGSK ERQKNYPAAG
0701: KRKEEHQASL PRQSKEHDEH KKRGSYTCGN RNEHRDADNG SKERQKDYPT AGKRKEEHQA SLPRQSKEHD EHKKRGSYTC DDRNEHRDAD NGSKEQKDYS
0801: AAGKRKEEHQ ASLPRQSKEH GAHKKRGSYT RDDRNDLRGA DKGSKERKDY PAAGKRKEEH QASLPRQSKE HDEHKKRGSY TRDDRNDLRD ADNSSKERKD
0901: YAAAGMRKEE RQASLPRQSK EHDEHKGRGS YTRNDRDDPR DVDNGSKESR NDYSAAQKGT EDHRAKSSRQ SEEHDNDNKR GSYTVDDRSH HCDADNGSRE
1001: KRGDFSDSGQ RKEEYRGKSL RQLKEHGDNK KRGSDTPADR NDLRDVDNGC NEKLATHGGS PCPGQRSPLP SCGSGSRSED KTLLDATTDR IMEM
001: MRRYSPPYYS PPRRGYGGRG RSPPPPPPRR GYGGGGGGGG RRGSSHGSLL VRNIPLDCRP EELREPFERF GPVRDVYIPR DYYSGQPRGF AFVEFVDAYD
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR
Arabidopsis Description
SCL30Serine/arginine-rich SC35-like splicing factor SCL30 [Source:UniProtKB/Swiss-Prot;Acc:Q8L3X8]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.