Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02941 | Canola | nucleus | 97.87 | 99.28 |
| Bra014741.1-P | Field mustard | mitochondrion, nucleus, plastid | 98.58 | 94.24 |
| AT3G55460.1 | Thale cress | mitochondrion, nucleus | 84.4 | 90.84 |
| HORVU6Hr1G061320.1 | Barley | mitochondrion | 34.04 | 68.09 |
| KRH15102 | Soybean | nucleus | 63.12 | 65.68 |
| KRH73034 | Soybean | nucleus | 63.12 | 64.49 |
| EES16196 | Sorghum | nucleus | 59.57 | 64.12 |
| GSMUA_Achr8P34280_001 | Banana | nucleus | 60.28 | 63.2 |
| EES10309 | Sorghum | nucleus | 60.28 | 62.96 |
| Os02t0252100-02 | Rice | nucleus | 58.51 | 62.26 |
| Os12t0572400-01 | Rice | nucleus | 57.8 | 61.98 |
| HORVU7Hr1G118660.4 | Barley | nucleus | 48.23 | 59.91 |
| GSMUA_Achr1P17340_001 | Banana | nucleus | 56.03 | 58.96 |
| TraesCS4B01G025600.1 | Wheat | nucleus | 56.03 | 58.74 |
| TraesCS4A01G289300.1 | Wheat | nucleus | 55.32 | 58.65 |
| HORVU4Hr1G003820.8 | Barley | nucleus | 55.32 | 58.65 |
| HORVU4Hr1G058060.2 | Barley | mitochondrion, nucleus | 47.52 | 58.26 |
| TraesCS4D01G022700.1 | Wheat | nucleus | 56.03 | 58.09 |
| Zm00001d048609_P001 | Maize | nucleus, plastid | 58.51 | 57.29 |
| HORVU2Hr1G073490.2 | Barley | cytosol, nucleus | 33.33 | 56.29 |
| TraesCS5D01G093200.1 | Wheat | nucleus, plastid | 57.45 | 54.73 |
| TraesCS5B01G087000.2 | Wheat | nucleus, plastid | 57.45 | 54.73 |
| TraesCS5A01G079000.1 | Wheat | nucleus | 57.09 | 54.39 |
| HORVU5Hr1G021180.4 | Barley | nucleus, plastid | 57.09 | 53.49 |
| HORVU6Hr1G034010.3 | Barley | nucleus | 49.65 | 53.44 |
| VIT_13s0019g01060.t01 | Wine grape | nucleus | 64.89 | 51.84 |
| CDY08473 | Canola | nucleus | 33.69 | 46.34 |
| CDY24176 | Canola | nucleus | 41.49 | 44.83 |
| CDY07084 | Canola | nucleus | 41.49 | 44.49 |
| Zm00001d030739_P002 | Maize | mitochondrion, nucleus, plastid | 57.09 | 43.63 |
| CDY24043 | Canola | nucleus | 42.2 | 41.9 |
| CDY33060 | Canola | nucleus | 41.49 | 40.77 |
| CDY01078 | Canola | nucleus | 34.04 | 40.34 |
| CDY02449 | Canola | nucleus | 32.27 | 39.22 |
| CDY26110 | Canola | mitochondrion, nucleus | 39.72 | 37.71 |
| CDY08236 | Canola | nucleus | 40.43 | 35.85 |
| CDY10571 | Canola | nucleus | 36.52 | 30.56 |
| CDX84503 | Canola | nucleus | 24.47 | 25.46 |
| Os11t0704700-01 | Rice | nucleus | 41.49 | 22.9 |
| TraesCS4A01G176000.13 | Wheat | nucleus | 50.71 | 15.71 |
| TraesCS4D01G136700.4 | Wheat | nucleus | 49.29 | 15.33 |
| CDY43799 | Canola | vacuole | 17.38 | 15.17 |
| TraesCS4B01G141700.1 | Wheat | nucleus | 35.82 | 12.72 |
| HORVU4Hr1G027820.11 | Barley | nucleus, plastid | 48.58 | 12.52 |
Protein Annotations
| EnsemblPlants:CDX76092 | EnsemblPlantsGene:GSBRNA2T00126360001 | Gene3D:3.30.70.330 | GO:A0A078CH81 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR23147 | PANTHER:PTHR23147:SF1 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDX76092 | ProteinID:CDX76092.1 |
| SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EEB798 | MapMan:16.4.6.2 | : |
Description
BnaA04g03560D
Coordinates
chrLK031806:-:789419..791849
Molecular Weight (calculated)
31861.9 Da
IEP (calculated)
11.864
GRAVY (calculated)
-1.471
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRRYSPPYY SPPRRGYGGR GRSPPPPPPS RRGYGGGGRK GSSHGSLLVR NIPLDCRPEE LRVPFERFGP VRDVYIPRDY YSGEPRGFAF VEFVDAYDAG
101: EAQRSMNRRI FGGREITVVV ASESRKRPEE MRVKTRTRSR EPSGSRGRSH GRSRSRSISR SRSPRRPSDS RSRRRSRSYS PAPRRRGADY SASPRRRQEE
201: RPRSPLRSPP RGEGDAKYSR RSYSPGYEGA AAAAAAGDRD ANGDNETREK PDYEPEERRR GGREVSRSPS GSRSRSVEAS PR
101: EAQRSMNRRI FGGREITVVV ASESRKRPEE MRVKTRTRSR EPSGSRGRSH GRSRSRSISR SRSPRRPSDS RSRRRSRSYS PAPRRRGADY SASPRRRQEE
201: RPRSPLRSPP RGEGDAKYSR RSYSPGYEGA AAAAAAGDRD ANGDNETREK PDYEPEERRR GGREVSRSPS GSRSRSVEAS PR
001: MRRYSPPYYS PPRRGYGGRG RSPPPPPPRR GYGGGGGGGG RRGSSHGSLL VRNIPLDCRP EELREPFERF GPVRDVYIPR DYYSGQPRGF AFVEFVDAYD
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR
Arabidopsis Description
SCL30Serine/arginine-rich SC35-like splicing factor SCL30 [Source:UniProtKB/Swiss-Prot;Acc:Q8L3X8]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.