CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011910.1-P	Field mustard	nucleus	95.29	88.71
CDY08236	Canola	nucleus	94.61	88.36
CDY33060	Canola	nucleus	78.45	81.18
CDY24043	Canola	nucleus	77.1	80.63
AT1G55310.3	Thale cress	nucleus	74.75	74.25
CDY24176	Canola	nucleus	63.3	72.03
CDY07084	Canola	nucleus	63.64	71.86
PGSC0003DMT400081835	Potato	nucleus	56.9	68.15
Solyc01g005820.2.1	Tomato	nucleus	56.57	66.67
CDY08473	Canola	nucleus	42.42	61.46
PGSC0003DMT400010908	Potato	nucleus	55.22	58.57
CDY01078	Canola	nucleus	43.1	53.78
KRH38014	Soybean	endoplasmic reticulum, nucleus	45.45	47.2
CDY02449	Canola	nucleus	36.7	46.98
CDY02941	Canola	nucleus	37.37	39.93
CDX76092	Canola	plastid	37.71	39.72
CDY10571	Canola	nucleus	43.1	37.98
CDX84503	Canola	nucleus	20.54	22.51
CDY43799	Canola	vacuole	16.16	14.86

Protein Annotations

MapMan:16.4.6.2	Gene3D:3.30.70.330	GO:A0A078GI38	UniProt:A0A078GI38	EnsemblPlants:CDY26110	ProteinID:CDY26110
ProteinID:CDY26110.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00034743001
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23147
PANTHER:PTHR23147:SF41	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EDD8EA
SEG:seg	:	:	:	:	:

Description

BnaC06g10860DBnaC06g10860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GI38]

Coordinates

chrLK032185:-:307705..310540

Molecular Weight (calculated)

34020.6 Da

IEP (calculated)

12.170

GRAVY (calculated)

-1.511

Length

297 amino acids

Sequence
(BLAST)

001: MRGRSYTPSP PRRGYGRRGR RSPSPRGGGR YGGAPSVDLP TSLLVRNLRH DCRQEDLRRS FELFGPLKDI YMPRDYYTGD PRGFGFVQFV DPADAAEAKY
101: QMDGYHLLGR ELTVVFAEEN RKKPTEMRAR ERGGGRSVRS RDRRRSPPRY YSRSPPPRRG RSRSQSGDYY SPPSTRHHSR SISPREERYA RGRSYSRSPA
201: YNGSRGRSVT PARSKSRRIS RSPSPGRSIS PSPRRNVSRS PSPRRSRSNT PVPARGRSPR RKRSNTSRSN TPRSNTPVPA TNRSHREEEY EDRSPSQ

Best Arabidopsis Sequence Match ( AT1G55310.1 )
(BLAST)

001: MRGRSYTPSP PRGYGRRGRS PSPRGRYGGR SRDLPTSLLV RNLRHDCRQE DLRKSFEQFG PVKDIYLPRD YYTGDPRGFG FVQFMDPADA ADAKHHMDGY
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPSPRRS ISRSPRRSRS PSPKRNRSVS PRRSISRSPR RSRSPRRSRR SYTPEPARSR SQSPHGGQYD EDRSPSQ

Arabidopsis Description

SR33SC35-like splicing factor 33 [Source:TAIR;Acc:AT1G55310]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.