CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02449	Canola	nucleus	49.85	72.41
CDY24176	Canola	nucleus	38.87	50.19
CDY07084	Canola	nucleus	38.87	49.81
CDY08473	Canola	nucleus	29.97	49.27
Solyc01g005820.2.1	Tomato	nucleus	35.61	47.62
Bra030870.1-P	Field mustard	plastid	25.52	47.51
PGSC0003DMT400081835	Potato	nucleus	34.72	47.18
CDY24043	Canola	nucleus	38.87	46.13
CDY33060	Canola	nucleus	38.58	45.3
AT1G55310.3	Thale cress	nucleus	40.06	45.15
PGSC0003DMT400010908	Potato	nucleus	36.2	43.57
CDY01078	Canola	nucleus	30.56	43.28
CDY26110	Canola	mitochondrion, nucleus	37.98	43.1
CDY08236	Canola	nucleus	38.58	40.88
KRH38014	Soybean	endoplasmic reticulum, nucleus	31.45	37.06
CDY02941	Canola	nucleus	30.56	37.05
CDX76092	Canola	plastid	30.56	36.52
CDX84503	Canola	nucleus	16.32	20.3
CDY43799	Canola	vacuole	14.24	14.86

Protein Annotations

MapMan:16.4.6.2	Gene3D:3.30.70.330	GO:A0A078FB08	UniProt:A0A078FB08	EnsemblPlants:CDY10571	ProteinID:CDY10571
ProteinID:CDY10571.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00032533001
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23147
PANTHER:PTHR23147:SF41	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EDD303
SEG:seg	:	:	:	:	:

Description

BnaC03g70430DBnaC03g70430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FB08]

Coordinates

chrLK032004:-:459247..462243

Molecular Weight (calculated)

39055.3 Da

IEP (calculated)

12.412

GRAVY (calculated)

-1.462

Length

337 amino acids

Sequence
(BLAST)

001: MKQKTKNVNE SAVAKDKLVS FVKALHLCPA EKPETRRDFR RFNPNPNLLP LQSIEQSFAV PFVVTTDLRP PRGTAMRGRS YIPSPSPPPP PPRGHGRRGP
101: SPSPRDRARS RDLRTSLFVR QLSRDCREED LRKSFKQFGP LKDIHLPRDH HTGYPRRFGF VKFEDPADAA EAKDHMDGYV LLGRKMAVEF AENNRKTPTE
201: MRAKQRGDGR TRDRRRSRSR YYSSSPRSSR SPPPSRRHHS SRRKEGYDRR RRSYSRSPAK NGSRGRSETP ATSKSRSISR SPRRSISRSP RRNRSRSLRR
301: RRSNTPLPTS RNRSRRPRRR RSNTPLPGRS SSPRGKQ

Best Arabidopsis Sequence Match ( AT1G55310.1 )
(BLAST)

001: MRGRSYTPSP PRGYGRRGRS PSPRGRYGGR SRDLPTSLLV RNLRHDCRQE DLRKSFEQFG PVKDIYLPRD YYTGDPRGFG FVQFMDPADA ADAKHHMDGY
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPSPRRS ISRSPRRSRS PSPKRNRSVS PRRSISRSPR RSRSPRRSRR SYTPEPARSR SQSPHGGQYD EDRSPSQ

Arabidopsis Description

SR33SC35-like splicing factor 33 [Source:TAIR;Acc:AT1G55310]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.