CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76092
CDX79732
CDX81436
CDX83484
CDX84503
CDX95008
CDY02941
CDY07084
CDY14697
CDY22251
CDY22958
CDY23361
CDY24176
CDY43799
CDY44222
CDY46773
CDY47646
CDY59084
CDY66028

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13570.1	CDX95008	AT1G09140.1	18674533
AT3G13570.1	CDY66028	AT1G09140.1	18674533
AT3G13570.1	CDY47646	AT1G23860.1	18674533
AT3G13570.1	CDY59084	AT1G23860.1	18674533
AT3G13570.1	CDX79732	AT2G37340.1	18674533
AT3G13570.1	CDY46773	AT2G37340.1	18674533
AT3G13570.1	CDX83484	AT2G43370.1	15987817
AT3G13570.1	CDY14697	AT2G43370.1	15987817
AT3G13570.1	CDY22251	AT2G43370.1	15987817
AT3G13570.1	CDY23361	AT2G43370.1	15987817
AT3G13570.1	CDY44222	AT2G43370.1	15987817
AT3G13570.1	CDY07084	AT3G13570.1	18674533
AT3G13570.1	CDY24176	AT3G13570.1	18674533
AT3G13570.1	CDX76092	AT3G55460.1	18674533
AT3G13570.1	CDY02941	AT3G55460.1	18674533
AT3G13570.1	CDX81436	AT3G61860.1	18674533
AT3G13570.1	CDY22958	AT3G61860.1	18674533
AT3G13570.1	CDX84503	AT5G64200.2	18674533
AT3G13570.1	CDY43799	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07084	Canola	nucleus	99.23	98.48
Bra039394.1-P	Field mustard	nucleus	98.85	98.1
AT3G13570.1	Thale cress	nucleus	89.27	88.93
CDY24043	Canola	nucleus	75.86	69.72
CDY33060	Canola	nucleus	74.71	67.94
PGSC0003DMT400081835	Potato	nucleus	61.69	64.92
Solyc01g005820.2.1	Tomato	nucleus	62.45	64.68
CDY26110	Canola	mitochondrion, nucleus	72.03	63.3
CDY08473	Canola	nucleus	48.66	61.95
CDY08236	Canola	nucleus	74.33	61.01
PGSC0003DMT400010908	Potato	nucleus	63.6	59.29
CDY01078	Canola	nucleus	49.81	54.62
CDY02449	Canola	nucleus	42.53	47.84
KRH38014	Soybean	endoplasmic reticulum, nucleus	52.11	47.55
CDY02941	Canola	nucleus	44.83	42.09
CDX76092	Canola	plastid	44.83	41.49
CDY10571	Canola	nucleus	50.19	38.87
CDX84503	Canola	nucleus	23.75	22.88
CDY43799	Canola	vacuole	18.39	14.86

Protein Annotations

MapMan:16.4.6.2	Gene3D:3.30.70.330	GO:A0A078GFN0	UniProt:A0A078GFN0	EnsemblPlants:CDY24176	ProteinID:CDY24176
ProteinID:CDY24176.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00026259001
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23147
PANTHER:PTHR23147:SF41	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EEB126
SEG:seg	:	:	:	:	:

Description

BnaC01g37560DBnaC01g37560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFN0]

Coordinates

chrLK032155:+:18354..21037

Molecular Weight (calculated)

30379.4 Da

IEP (calculated)

12.010

GRAVY (calculated)

-1.681

Length

261 amino acids

Sequence
(BLAST)

001: MRGRSYTPSP PRGYGRRGRS PSPRGRYGGG RDRDLPTSLL VRNLRHDCRQ EDLRRPFEQF GPVKDIYLPR DYYTGDPRGF GFIQYVDPAD AAEAKHHMEG
101: YLLLGRELTV VFAEENRKKP TEMRTRDRGG RSNRFNDRRR SPPRYSRSPP PRRGGRTRSR SREYNSPPPK RHQSRSVSPQ ERRYEKERSY SRSPPRNGSR
201: ARSGSHEKAK KSYSGSRSPR RSVSPRRNRS YTPEQARSPV PRQSRSPSPR GERNVDRSPS Q

Best Arabidopsis Sequence Match ( AT3G13570.1 )
(BLAST)

001: MRGRSYTPSP PRGYGRRGRS PSPRGRFGGS RDSDLPTSLL VRNLRHDCRQ EDLRRPFEQF GPVKDIYLPR DYYTGDPRGF GFIQFMDPAD AAEAKHQMDG
101: YLLLGRELTV VFAEENRKKP TEMRTRDRGG RSNRFQDRRR SPPRYSRSPP PRRGRRSRSR SRGYNSPPAK RHQSRSVSPQ DRRYEKERSY SRSPPHNGSR
201: VRSGSPGRVK SHSRSPRRSV SPRKNRSYTP EQARSQSPVP RQSRSPTPVP RGAQNGDRSP SQ

Arabidopsis Description

SCL30ASerine/arginine-rich SC35-like splicing factor SCL30A [Source:UniProtKB/Swiss-Prot;Acc:Q9LHP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.