CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76092
CDX80910
CDY02941
CDY07084
CDY10512
CDY11283
CDY24176
CDY45430
CDY65665
CDY72459

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09140.1	CDY10512	AT1G53720.1	16497658
AT1G09140.1	CDY72459	AT1G53720.1	16497658
AT1G09140.1	CDY45430	AT2G29210.1	21798944
AT1G09140.1	CDY65665	AT2G29210.1	21798944
AT1G09140.1	CDY07084	AT3G13570.1	18674533
AT1G09140.1	CDY24176	AT3G13570.1	18674533
AT1G09140.1	CDX76092	AT3G55460.1	18674533
AT1G09140.1	CDY02941	AT3G55460.1	18674533
AT1G09140.1	CDX80910	AT5G04280.1	21798944
AT1G09140.1	CDY11283	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66028	Canola	cytosol	68.77	86.17
AT1G09140.1	Thale cress	cytosol	64.04	75.75
CDX94214	Canola	cytosol	41.01	65.0
TraesCS1D01G232100.2	Wheat	cytosol, mitochondrion, nucleus	52.05	64.96
TraesCS1A01G229900.1	Wheat	cytosol, mitochondrion, nucleus	51.73	64.82
TraesCS3B01G293100.1	Wheat	cytosol	52.05	64.71
KRG92904	Soybean	nucleus	56.15	64.49
KXG32406	Sorghum	cytosol	52.68	64.48
TraesCS3A01G260000.1	Wheat	cytosol	51.73	64.31
TraesCS3D01G260200.1	Wheat	cytosol	51.73	64.31
Solyc01g099810.2.1	Tomato	nucleus	53.0	63.64
VIT_14s0060g02290.t01	Wine grape	nucleus	55.52	61.11
TraesCS1B01G244200.1	Wheat	cytosol, mitochondrion, nucleus	51.42	60.59
Zm00001d041673_P001	Maize	cytosol	21.77	60.53
KXG21829	Sorghum	nucleus	51.1	58.27
Zm00001d040672_P013	Maize	nucleus	53.31	57.68
Os03t0344100-02	Rice	mitochondrion, nucleus	50.79	56.29
CDX91319	Canola	nucleus	52.68	55.85
TraesCS2D01G112200.1	Wheat	nucleus	49.84	55.63
TraesCS2A01G111600.2	Wheat	mitochondrion, nucleus	49.84	55.63
HORVU2Hr1G019410.4	Barley	mitochondrion, nucleus	50.16	55.59
Zm00001d047498_P003	Maize	nucleus	49.84	55.44
CDY22050	Canola	nucleus	53.94	55.34
EER94870	Sorghum	mitochondrion, nucleus	49.84	55.24
CDY50385	Canola	nucleus	53.31	54.87
CDX97264	Canola	nucleus	52.68	54.75
Os07t0673500-01	Rice	nucleus	51.1	54.73
CDX86974	Canola	nucleus	46.06	54.28
CDY00202	Canola	nucleus	46.69	53.82
TraesCS4B01G157000.1	Wheat	mitochondrion, nucleus	49.53	53.58
TraesCS4D01G168700.1	Wheat	mitochondrion, nucleus	49.53	53.58
HORVU4Hr1G046940.7	Barley	mitochondrion, nucleus	49.53	53.22
Os05t0364600-01	Rice	nucleus	53.31	52.98
TraesCS4A01G157700.1	Wheat	mitochondrion	49.21	52.7
CDX68538	Canola	nucleus	46.06	51.77
CDY08133	Canola	cytosol	46.37	50.87
CDY05936	Canola	nucleus	47.0	50.51
GSMUA_Achr8P10150_001	Banana	nucleus	55.52	50.29
GSMUA_Achr11P...	Banana	nucleus	53.94	49.42
HORVU3Hr1G064550.7	Barley	nucleus, peroxisome	51.42	48.51
TraesCS2B01G130400.1	Wheat	nucleus	51.1	46.82
PGSC0003DMT400063701	Potato	nucleus	48.27	46.36
Zm00001d037925_P006	Maize	cytosol, nucleus, plastid	47.95	43.93
Os01t0316600-01	Rice	plastid	15.14	38.71
CDY11223	Canola	nucleus	24.61	29.66
CDX80835	Canola	nucleus	24.61	29.43
CDY41599	Canola	nucleus	26.5	29.27
CDY44717	Canola	nucleus	26.5	28.47
CDX79732	Canola	nucleus	25.87	27.99
CDX78183	Canola	nucleus	24.92	27.92
CDX73550	Canola	nucleus	24.92	27.82
CDY46773	Canola	nucleus	27.13	27.22
CDY07586	Canola	mitochondrion, nucleus	24.29	26.74
CDY52755	Canola	mitochondrion, nucleus	24.29	26.46
Zm00001d009821_P001	Maize	plastid	26.5	26.42
CDY61855	Canola	nucleus	49.21	26.4
CDY45333	Canola	nucleus, plastid, vacuole	5.99	15.57

Protein Annotations

EnsemblPlants:CDX95008	EnsemblPlantsGene:GSBRNA2T00100521001	Gene3D:3.30.70.330	GO:A0A078E6L1	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR43933	PANTHER:PTHR43933:SF7	PFAM:PF00076	PFscan:PS50102	ProteinID:CDX95008	ProteinID:CDX95008.1
SEG:seg	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EED6FE	MapMan:16.4.6.1	:

Description

BnaC05g06630D

Coordinates

chrLK031886:+:661281..664585

Molecular Weight (calculated)

36589.4 Da

IEP (calculated)

9.971

GRAVY (calculated)

-0.992

Length

317 amino acids

Sequence
(BLAST)

001: METADDDWNI TLTSNRRVFE DEKKQRNLPE RERDRERSDA FPEPRENVPL VKFRSNNNLT LSRSSSSSRL SLQANMSSSR WNRTIYVGNL PGDIRMREVE
101: DLFYKYGPIV DIDLKIPPRP PGYAFVEFED PRDADDAIYG RDGYDFDGCR LRVEIAHGGR RGSSSVDRYS SGSRAPSRRS DYRVLVTGLP PSASWQDLKD
201: HMRKAGDVCF SEVFRDRGGM SGVVEYSNYD DMKYAIRKLD DSKFRNAFSR SYIRVREYES RSVSRSPYYS RSRSRSYSYS SRSLSRSPTP RPRSPTPYSS
301: ISRSGSLRRA GDWILGT

Best Arabidopsis Sequence Match ( AT1G09140.2 )
(BLAST)

001: MSSRWNRTIY VGNLPGDIRK CEVEDLFYKY GPIVDIDLKI PPRPPGYAFV EFEDPRDADD AIYGRDGYDF DGCRLRVEIA HGGRRFSPSV DRYSSSYSAS
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRSGSLL RAGDWI

Arabidopsis Description

SR30Serine/arginine-rich splicing factor SR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFR5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.