CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00202	Canola	nucleus	99.26	97.09
Bra019595.1-P	Field mustard	nucleus	99.26	93.68
CDX94214	Canola	cytosol	69.14	93.0
CDY08133	Canola	cytosol	95.54	88.93
CDY05936	Canola	nucleus	96.65	88.14
CDX68538	Canola	nucleus	89.59	85.46
AT3G49430.4	Thale cress	nucleus	92.94	83.33
KRH64312	Soybean	nucleus	76.95	77.53
VIT_16s0098g01020.t01	Wine grape	nucleus	71.75	77.2
KRH53616	Soybean	nucleus	73.61	75.29
GSMUA_Achr1P06160_001	Banana	nucleus	68.77	74.3
Solyc03g082380.2.1	Tomato	nucleus	72.49	69.64
CDY66028	Canola	cytosol	58.74	62.45
CDX91319	Canola	nucleus	64.31	57.86
CDX97264	Canola	nucleus	63.94	56.39
PGSC0003DMT400008347	Potato	cytosol	66.54	55.76
CDY22050	Canola	nucleus	63.94	55.66
CDY50385	Canola	nucleus	63.57	55.52
CDX95008	Canola	nucleus	54.28	46.06
CDY61855	Canola	nucleus	91.82	41.79
CDY41599	Canola	nucleus	31.6	29.62
CDY44717	Canola	nucleus	31.97	29.15
CDX80835	Canola	nucleus	28.62	29.06
CDY11223	Canola	nucleus	27.88	28.52
CDX79732	Canola	nucleus	30.86	28.33
CDX78183	Canola	nucleus	29.0	27.56
CDX73550	Canola	nucleus	28.62	27.11
CDY07586	Canola	mitochondrion, nucleus	28.25	26.39
CDY46773	Canola	nucleus	30.86	26.27
CDY52755	Canola	mitochondrion, nucleus	28.25	26.12
CDY45333	Canola	nucleus, plastid, vacuole	4.83	10.66

Protein Annotations

EnsemblPlants:CDX86974	EnsemblPlantsGene:GSBRNA2T00145800001	Gene3D:3.30.70.330	GO:A0A078DF27	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR43933	PANTHER:PTHR43933:SF5	PFAM:PF00076	PFscan:PS50102	ProteinID:CDX86974	ProteinID:CDX86974.1
SEG:seg	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EDD644	MapMan:16.4.6.1	:

Description

BnaC03g52440D

Coordinates

chrLK031848:-:1005170..1008495

Molecular Weight (calculated)

30550.9 Da

IEP (calculated)

11.016

GRAVY (calculated)

-1.033

Length

269 amino acids

Sequence
(BLAST)

001: MSGRFSRSIY VGNLPGDIRE SEIEDLFYKY GRIVDIELKV PPRPPCYCFV EFEHARDAED AVDGRDGYNF DGCRLRVELA HGGRGQSSGD RRGGGGSARF
101: GVSRHSEFRV IVRGLPSSAS WQDLKDHMRK AGDVCFAEVT RDSNGTYGLV DYTNYDDMKY AIRKLDDTEF RNPWARGYIR VKKYESSLSR SPSRSRSRSR
201: SRGRGRSPSR SISRSRSPRK DLSKSPRRSL SRSISKSRSP SPDRKKSPPR AMSRSRSRSL SKSPAKVYK

Best Arabidopsis Sequence Match ( AT3G49430.6 )
(BLAST)

001: MSGRFSRSIY VGNLPGDIRE HEIEDIFYKY GRIVDIELKV PPRPPCYCFV EFEHSRDAED AIKGRDGYNL DGCRLRVELA HGGRGQSSSD RRGGYGGGGS
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV

Arabidopsis Description

SR34ASerine/arginine-rich splicing factor SR34A [Source:UniProtKB/Swiss-Prot;Acc:A2RVS6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.