Factsheet for Solyc03g082380.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0098g01020.t01	Wine grape	nucleus	71.43	80.0
KRH64312	Soybean	nucleus	76.07	79.78
CDX94214	Canola	cytosol	56.79	79.5
KRH53616	Soybean	nucleus	73.93	78.71
CDX86974	Canola	nucleus	69.64	72.49
CDY00202	Canola	nucleus	71.07	72.36
Bra019595.1-P	Field mustard	nucleus	72.14	70.88
Bra017986.1-P	Field mustard	nucleus	71.43	70.42
GSMUA_Achr1P06160_001	Banana	nucleus	61.07	68.67
CDY08133	Canola	cytosol	70.71	68.51
AT3G49430.4	Thale cress	nucleus	72.86	68.0
CDY05936	Canola	nucleus	71.43	67.8
CDX68538	Canola	nucleus	66.43	65.96
PGSC0003DMT400008347	Potato	cytosol	75.0	65.42
Bra029955.1-P	Field mustard	nucleus	60.36	65.0
Solyc01g099810.2.1	Tomato	nucleus	53.57	56.82
Solyc09g075090.1.1	Tomato	nucleus	56.43	51.8
Solyc06g009060.2.1	Tomato	nucleus	32.86	35.11
CDY61855	Canola	nucleus	67.14	31.81
Solyc05g054920.2.1	Tomato	nucleus	30.0	24.93
Solyc09g005980.2.1	Tomato	nucleus	27.86	24.76

Protein Annotations

MapMan:16.4.6.1	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0005829	InterPro:IPR000504	InterPro:IPR012677	UniProt:K4BI15	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43933	PANTHER:PTHR43933:SF5	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc03g082380.2	EnsemblPlants:Solyc03g082380.2.1	UniParc:UPI000276837B	SEG:seg

Description

Serine/arginine-rich splicing factor SR34A [Source:Projected from Arabidopsis thaliana (AT3G49430) UniProtKB/Swiss-Prot;Acc:A2RVS6]

Coordinates

chr3:-:52318231..52324618

Molecular Weight (calculated)

31602.8 Da

IEP (calculated)

11.488

GRAVY (calculated)

-1.097

Length

280 amino acids

Sequence
(BLAST)

001: MSGRFSRSIY VGNLPADIKE LEVEDLFYKY GRILDIELKI PPRPPCYCFV EFESSRDAED AIRGRDGYNF DGCRLRVELA HGGRGPSSSS DRRGSYGSGG
101: GGGGGRHGIS RHSDYRVIIR GLPSSASWQD LKDHMRKAGD VCFAEVSRDS EGTFGLVDYT NYEDMKYAIR KLDDTEFRNP WTRTYIRVRE YKGSPSRSRS
201: RSRSRSRSRS RSRRSPARSI SRSPPPKSRS ASPVKSTRSR SLSRSMSRSR SRSRSRSRSK SRSPSRSRSA SPQQARSNSG

Best Arabidopsis Sequence Match ( AT3G49430.6 )
(BLAST)

001: MSGRFSRSIY VGNLPGDIRE HEIEDIFYKY GRIVDIELKV PPRPPCYCFV EFEHSRDAED AIKGRDGYNL DGCRLRVELA HGGRGQSSSD RRGGYGGGGS
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV

Arabidopsis Description

SR34ASerine/arginine-rich splicing factor SR34A [Source:UniProtKB/Swiss-Prot;Acc:A2RVS6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.