CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029955.1-P	Field mustard	nucleus	84.04	91.15
CDX86974	Canola	nucleus	85.46	89.59
CDY00202	Canola	nucleus	86.17	88.36
CDX94214	Canola	cytosol	62.41	88.0
CDY08133	Canola	cytosol	87.59	85.47
CDY05936	Canola	nucleus	88.65	84.75
AT3G49430.4	Thale cress	nucleus	86.88	81.67
KRH53616	Soybean	nucleus	69.5	74.52
VIT_16s0098g01020.t01	Wine grape	nucleus	65.96	74.4
KRH64312	Soybean	nucleus	70.21	74.16
GSMUA_Achr1P06160_001	Banana	nucleus	64.54	73.09
Solyc03g082380.2.1	Tomato	nucleus	65.96	66.43
CDY66028	Canola	cytosol	55.32	61.66
CDX91319	Canola	nucleus	59.93	56.52
CDY22050	Canola	nucleus	60.28	55.02
CDY50385	Canola	nucleus	59.57	54.55
CDX97264	Canola	nucleus	58.87	54.43
PGSC0003DMT400008347	Potato	cytosol	60.99	53.58
CDY61855	Canola	nucleus	97.87	46.7
CDX95008	Canola	nucleus	51.77	46.06
CDX79732	Canola	nucleus	29.79	28.67
CDY41599	Canola	nucleus	29.08	28.57
CDY44717	Canola	nucleus	29.43	28.14
CDX80835	Canola	nucleus	25.53	27.17
CDX78183	Canola	nucleus	26.95	26.86
CDY11223	Canola	nucleus	24.82	26.62
CDY46773	Canola	nucleus	29.79	26.58
CDX73550	Canola	nucleus	26.6	26.41
CDY07586	Canola	mitochondrion, nucleus	26.95	26.39
CDY52755	Canola	mitochondrion, nucleus	26.95	26.12
CDY45333	Canola	nucleus, plastid, vacuole	4.61	10.66

Protein Annotations

EnsemblPlants:CDX68538	EnsemblPlantsGene:GSBRNA2T00126096001	Gene3D:3.30.70.330	GO:A0A078C0B3	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR43933	PANTHER:PTHR43933:SF5	PFAM:PF00076	PFscan:PS50102	ProteinID:CDX68538	ProteinID:CDX68538.1
SEG:seg	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EE01B1	MapMan:16.4.6.1	:

Description

BnaC01g26160D

Coordinates

chrLK031788:+:3570021..3572891

Molecular Weight (calculated)

31784.1 Da

IEP (calculated)

10.889

GRAVY (calculated)

-1.158

Length

282 amino acids

Sequence
(BLAST)

001: MSDRSSRSIY VGNLPGDIRE SEIEDLFYKY GRIVDIELKV PPRPPCYCFI EFEHPRDAKD AVDGRDGYNF DGCRLRVELS HGGRGQSSGD RRGGYGGGGG
101: YRGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDRDGA YGVVDYTNYD DMKYAIRKLD DTEFKNPWAR GYIRVKKYES
201: SQSRSPSRSR SRSRGRDRSR NRSRSISRSK SPRKDMSKSP RRSPAKSISK SRSPSPDRKN PLRSRSRSRS LSKSPAKVYN RQ

Best Arabidopsis Sequence Match ( AT3G49430.6 )
(BLAST)

001: MSGRFSRSIY VGNLPGDIRE HEIEDIFYKY GRIVDIELKV PPRPPCYCFV EFEHSRDAED AIKGRDGYNL DGCRLRVELA HGGRGQSSSD RRGGYGGGGS
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV

Arabidopsis Description

SR34ASerine/arginine-rich splicing factor SR34A [Source:UniProtKB/Swiss-Prot;Acc:A2RVS6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.