CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036267.1-P	Field mustard	nucleus	98.38	97.44
CDY50385	Canola	nucleus	97.09	97.4
CDX91319	Canola	nucleus	90.94	93.98
CDX97264	Canola	nucleus	91.59	92.79
AT4G02430.4	Thale cress	nucleus	78.96	83.56
CDY66028	Canola	cytosol	57.93	70.75
KRG96443	Soybean	nucleus	71.2	70.29
TraesCS1A01G229900.1	Wheat	cytosol, mitochondrion, nucleus	56.63	69.17
TraesCS3D01G260200.1	Wheat	cytosol	56.96	69.02
TraesCS3B01G293100.1	Wheat	cytosol	56.96	69.02
TraesCS1D01G232100.2	Wheat	cytosol, mitochondrion, nucleus	56.63	68.9
KXG32406	Sorghum	cytosol	57.61	68.73
EER94870	Sorghum	mitochondrion, nucleus	63.43	68.53
TraesCS2A01G111600.2	Wheat	mitochondrion, nucleus	62.78	68.31
TraesCS3A01G260000.1	Wheat	cytosol	56.31	68.24
KRH68188	Soybean	nucleus	66.02	68.23
Os03t0344100-02	Rice	mitochondrion, nucleus	63.11	68.18
Zm00001d047498_P003	Maize	nucleus	62.78	68.07
HORVU2Hr1G019410.4	Barley	mitochondrion, nucleus	62.78	67.83
TraesCS2D01G112200.1	Wheat	nucleus	62.14	67.61
PGSC0003DMT400029666	Potato	nucleus	68.61	67.3
CDX94214	Canola	cytosol	43.04	66.5
TraesCS4D01G168700.1	Wheat	mitochondrion, nucleus	62.14	65.53
Os07t0673500-01	Rice	nucleus	62.46	65.2
TraesCS1B01G244200.1	Wheat	cytosol, mitochondrion, nucleus	56.63	65.06
KXG21829	Sorghum	nucleus	58.25	64.75
HORVU4Hr1G046940.7	Barley	mitochondrion, nucleus	61.81	64.75
TraesCS4B01G157000.1	Wheat	mitochondrion, nucleus	61.16	64.51
TraesCS4A01G157700.1	Wheat	mitochondrion	61.49	64.19
CDX86974	Canola	nucleus	55.66	63.94
CDY00202	Canola	nucleus	56.63	63.64
VIT_07s0005g00320.t01	Wine grape	nucleus	63.11	63.31
Zm00001d040672_P013	Maize	nucleus	59.22	62.46
Solyc09g075090.1.1	Tomato	nucleus	60.84	61.64
GSMUA_Achr11P...	Banana	nucleus	67.96	60.69
PGSC0003DMT400037966	Potato	cytosol, extracellular, nucleus	57.28	60.62
Os05t0364600-01	Rice	nucleus	62.46	60.5
CDX68538	Canola	nucleus	55.02	60.28
CDY08133	Canola	cytosol	55.66	59.52
CDY05936	Canola	nucleus	56.63	59.32
GSMUA_Achr8P10150_001	Banana	nucleus	66.99	59.14
TraesCS2B01G130400.1	Wheat	nucleus	62.46	55.78
Zm00001d041673_P001	Maize	cytosol	20.39	55.26
CDX95008	Canola	nucleus	55.34	53.94
HORVU3Hr1G064550.7	Barley	nucleus, peroxisome	56.63	52.08
Zm00001d037925_P006	Maize	cytosol, nucleus, plastid	54.69	48.84
Solyc06g009060.2.1	Tomato	nucleus	40.45	47.71
Os01t0316600-01	Rice	plastid	13.92	34.68
CDX79732	Canola	nucleus	32.69	34.47
CDY41599	Canola	nucleus	31.07	33.45
CDX78183	Canola	nucleus	30.1	32.86
CDX73550	Canola	nucleus	30.1	32.75
CDY11223	Canola	nucleus	27.51	32.32
CDY07586	Canola	mitochondrion, nucleus	30.1	32.29
CDY46773	Canola	nucleus	33.01	32.28
CDY44717	Canola	nucleus	30.74	32.2
CDX80835	Canola	nucleus	27.51	32.08
CDY52755	Canola	mitochondrion, nucleus	30.1	31.96
CDY61855	Canola	nucleus	55.99	29.27
Zm00001d009821_P001	Maize	plastid	26.21	25.47
CDY45333	Canola	nucleus, plastid, vacuole	4.53	11.48

Protein Annotations

MapMan:16.4.6.1	Gene3D:3.30.70.330	GO:A0A078G6G6	UniProt:A0A078G6G6	EnsemblPlants:CDY22050	ProteinID:CDY22050
ProteinID:CDY22050.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00018427001
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43933
PANTHER:PTHR43933:SF7	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EE4322
SEG:seg	:	:	:	:	:

Description

BnaA09g00790DBnaA09g00790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G6G6]

Coordinates

chrLK032127:+:353540..356414

Molecular Weight (calculated)

34381.9 Da

IEP (calculated)

11.643

GRAVY (calculated)

-1.275

Length

309 amino acids

Sequence
(BLAST)

001: MSSRSSRTIY VGNLPGDIRE REVEDLFSKY GPVVQIDLKI PPRPPGYAFV EFEDPRDADD AIHGRDGYDF DGHCLRVELA HGGRRSSNDA RGSYGGGGSR
101: GGGGGRDGGD RGRGPSRRSE YRVVVSGLPS SASWQDLKDH MRKGGEVCFS QVFRDGRGTT GIVDYTSYED MKYAIKKLDD TEFRNAFSRG YVRVREYDSR
201: KDSRSPSRGR SYSKSRSRSR GRSHSRSLSR SRSRSRSPKA KSSRRSPAKS TSRSPRSRSK SRTPPPRGSR SRSRSPPPPV HKEASKSPSK VSPAKSPMRS
301: RSRSRSPSR

Best Arabidopsis Sequence Match ( AT1G02840.1 )
(BLAST)

001: MSSRSSRTVY VGNLPGDIRE REVEDLFSKY GPVVQIDLKV PPRPPGYAFV EFDDARDAED AIHGRDGYDF DGHRLRVELA HGGRRSSDDT RGSFNGGGRG
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRSRSR SRSPLPSVQK EGSKSPSKPS PAKSPIHTRS
301: PSR

Arabidopsis Description

SR34Serine/arginine-rich-splicing factor SR34 [Source:UniProtKB/Swiss-Prot;Acc:O22315]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.