Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G229900.1 | Wheat | cytosol, mitochondrion, nucleus | 89.96 | 95.65 |
| TraesCS1D01G232100.2 | Wheat | cytosol, mitochondrion, nucleus | 89.22 | 94.49 |
| KXG21829 | Sorghum | nucleus | 78.81 | 76.26 |
| TraesCS3B01G293100.1 | Wheat | cytosol | 72.12 | 76.08 |
| Bra018581.1-P | Field mustard | cytosol | 59.48 | 68.97 |
| Os05t0364600-01 | Rice | nucleus | 81.41 | 68.65 |
| CDY66028 | Canola | cytosol | 62.08 | 66.01 |
| VIT_14s0060g02290.t01 | Wine grape | nucleus | 68.4 | 63.89 |
| AT1G09140.1 | Thale cress | cytosol | 63.2 | 63.43 |
| Solyc01g099810.2.1 | Tomato | nucleus | 62.08 | 63.26 |
| TraesCS4B01G157000.1 | Wheat | mitochondrion, nucleus | 68.4 | 62.8 |
| KRG92904 | Soybean | nucleus | 60.97 | 59.42 |
| CDX91319 | Canola | nucleus | 65.43 | 58.86 |
| VIT_07s0005g00320.t01 | Wine grape | nucleus | 66.17 | 57.79 |
| KRG96443 | Soybean | nucleus | 66.54 | 57.19 |
| CDX97264 | Canola | nucleus | 64.31 | 56.72 |
| CDY22050 | Canola | nucleus | 65.06 | 56.63 |
| CDY50385 | Canola | nucleus | 64.68 | 56.49 |
| Bra036267.1-P | Field mustard | nucleus | 65.43 | 56.41 |
| Bra018550.1-P | Field mustard | nucleus | 54.65 | 56.32 |
| PGSC0003DMT400029666 | Potato | nucleus | 65.8 | 56.19 |
| Zm00001d037925_P006 | Maize | cytosol, nucleus, plastid | 72.12 | 56.07 |
| AT4G02430.4 | Thale cress | nucleus | 59.48 | 54.79 |
| AT1G02840.1 | Thale cress | nucleus | 61.71 | 54.79 |
| KRH68188 | Soybean | nucleus | 60.59 | 54.52 |
| PGSC0003DMT400037966 | Potato | cytosol, extracellular, nucleus | 58.74 | 54.11 |
| Solyc09g075090.1.1 | Tomato | nucleus | 60.97 | 53.77 |
| CDX95008 | Canola | nucleus | 60.59 | 51.42 |
| TraesCS2B01G130400.1 | Wheat | nucleus | 65.06 | 50.58 |
| PGSC0003DMT400063701 | Potato | nucleus | 55.76 | 45.45 |
| Solyc06g009060.2.1 | Tomato | nucleus | 39.03 | 40.08 |
| TraesCS1B01G065900.2 | Wheat | nucleus | 35.32 | 27.86 |
| TraesCS3B01G151100.1 | Wheat | nucleus | 32.34 | 26.93 |
| TraesCS1B01G130200.3 | Wheat | nucleus | 28.62 | 26.83 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G244200.1 | EnsemblPlantsGene:TraesCS1B01G244200 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR43933 |
| PANTHER:PTHR43933:SF1 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGR:cd12599 | TIGR:cd12602 | MapMan:16.4.6.1 | : | : | : |
Description
No Description!
Coordinates
chr1B:+:433433931..433438916
Molecular Weight (calculated)
30556.5 Da
IEP (calculated)
10.351
GRAVY (calculated)
-0.942
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRRSNGRTI YVGNLPEDIR EREIEDLFYK YGPIVDIDLK IPPRPPVYAF VEFEDPRDAD DAIYGRDGYD FDGHKLRVEL AHGGKGPYFI RPSSYSSSGR
101: HGAVRRSDYR VIVTGLPSSA SWQDLKDHMR RAGDVCFSDV YPEAGAITGI VEYTNYEDMK HAIRKLDDSE FRNAFSRAYI RVREYNARRS RSYSRGRSRS
201: CSYSRSRSHS YSRSKSPRSR PASRSPSPVK ARSSSRSLSP AAPAHDKSAS RSPVRSRSLP RSQSPVKSE
101: HGAVRRSDYR VIVTGLPSSA SWQDLKDHMR RAGDVCFSDV YPEAGAITGI VEYTNYEDMK HAIRKLDDSE FRNAFSRAYI RVREYNARRS RSYSRGRSRS
201: CSYSRSRSHS YSRSKSPRSR PASRSPSPVK ARSSSRSLSP AAPAHDKSAS RSPVRSRSLP RSQSPVKSE
001: MSSRWNRTIY VGNLPGDIRK CEVEDLFYKY GPIVDIDLKI PPRPPGYAFV EFEDPRDADD AIYGRDGYDF DGCRLRVEIA HGGRRFSPSV DRYSSSYSAS
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRYEC
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRYEC
Arabidopsis Description
SR30Serine/arginine-rich splicing factor SR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFR5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.