Factsheet for Bra018581.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005798.1-P
Bra014741.1-P
Bra018407.1-P
Bra030819.1-P
Bra039394.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09140.1	Bra030819.1-P	AT1G53720.1	16497658
AT1G09140.1	Bra018407.1-P	AT2G29210.1	21798944
AT1G09140.1	Bra039394.1-P	AT3G13570.1	18674533
AT1G09140.1	Bra014741.1-P	AT3G55460.1	18674533
AT1G09140.1	Bra005798.1-P	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66028	Canola	cytosol	97.41	89.33
AT1G09140.1	Thale cress	cytosol	91.38	79.1
TraesCS3B01G293100.1	Wheat	cytosol	71.98	65.49
TraesCS3D01G260200.1	Wheat	cytosol	71.55	65.1
TraesCS3A01G260000.1	Wheat	cytosol	71.55	65.1
KXG32406	Sorghum	cytosol	72.41	64.86
KRG92904	Soybean	nucleus	76.29	64.13
TraesCS1A01G229900.1	Wheat	cytosol, mitochondrion, nucleus	69.4	63.64
TraesCS1D01G232100.2	Wheat	cytosol, mitochondrion, nucleus	69.4	63.39
Solyc01g099810.2.1	Tomato	nucleus	71.12	62.5
VIT_14s0060g02290.t01	Wine grape	nucleus	77.16	62.15
Zm00001d041673_P001	Maize	cytosol	29.74	60.53
TraesCS1B01G244200.1	Wheat	cytosol, mitochondrion, nucleus	68.97	59.48
KXG21829	Sorghum	nucleus	68.97	57.55
TraesCS2A01G111600.2	Wheat	mitochondrion, nucleus	70.26	57.39
TraesCS2D01G112200.1	Wheat	nucleus	70.26	57.39
HORVU2Hr1G019410.4	Barley	mitochondrion, nucleus	70.69	57.34
Os03t0344100-02	Rice	mitochondrion, nucleus	70.69	57.34
Zm00001d040672_P013	Maize	nucleus	72.41	57.34
Zm00001d047498_P003	Maize	nucleus	69.4	56.49
Bra018550.1-P	Field mustard	nucleus	63.36	56.32
EER94870	Sorghum	mitochondrion, nucleus	69.4	56.29
Bra029955.1-P	Field mustard	nucleus	62.93	56.15
Os07t0673500-01	Rice	nucleus	71.55	56.08
TraesCS4D01G168700.1	Wheat	mitochondrion, nucleus	68.97	54.61
TraesCS4B01G157000.1	Wheat	mitochondrion, nucleus	68.97	54.61
Bra036267.1-P	Field mustard	nucleus	73.28	54.49
HORVU4Hr1G046940.7	Barley	mitochondrion, nucleus	68.97	54.24
Bra017986.1-P	Field mustard	nucleus	65.95	53.87
TraesCS4A01G157700.1	Wheat	mitochondrion	68.53	53.72
Bra019595.1-P	Field mustard	nucleus	65.95	53.68
Os05t0364600-01	Rice	nucleus	72.41	52.66
GSMUA_Achr8P10150_001	Banana	nucleus	75.0	49.71
GSMUA_Achr11P...	Banana	nucleus	74.14	49.71
HORVU3Hr1G064550.7	Barley	nucleus, peroxisome	71.55	49.4
TraesCS2B01G130400.1	Wheat	nucleus	70.26	47.11
PGSC0003DMT400063701	Potato	nucleus	65.52	46.06
Zm00001d037925_P006	Maize	cytosol, nucleus, plastid	65.95	44.22
Os01t0316600-01	Rice	plastid	18.97	35.48
Bra029777.1-P	Field mustard	nucleus	34.48	27.87
Bra007004.1-P	Field mustard	nucleus	34.48	26.94
Bra003139.1-P	Field mustard	mitochondrion, nucleus	33.62	26.8
Bra023114.1-P	Field mustard	nucleus	35.34	25.95
Zm00001d009821_P001	Maize	plastid	34.91	25.47
Bra005756.1-P	Field mustard	nucleus	22.41	22.61

Protein Annotations

MapMan:16.4.6.1	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra018581	EnsemblPlants:Bra018581.1	EnsemblPlants:Bra018581.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006376	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016607	GO:GO:0035061	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4DPZ0	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43933	PANTHER:PTHR43933:SF7
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000253E823	SEG:seg

Description

AT1G09140 (E=7e-082) | SF2/ASF-like splicing modulator (SRP30)

Coordinates

chrA06:-:3131114..3133523

Molecular Weight (calculated)

26723.9 Da

IEP (calculated)

9.969

GRAVY (calculated)

-0.964

Length

232 amino acids

Sequence
(BLAST)

001: MSSSRWNRTI YVGNLPGDIR MREVEDLFYK YGPIVDIDLK IPPRPPGYAF VEFEDPRDAD DAIYGRDGYD FDGCRLRVEI AHGGRRGSSS VDRHSSSYSG
101: SRAPSRRSDY RVLVTGLPPS ASWQDLKDHM RKAGDVCFSE VFRDRGGMSG VVDYSNYDDM KYAIRKLDDS EFRNAFSRAY IRVREYESRS VSRSPYYSRS
201: RSRSRGRSYS YSSRRSRSRS RSNSPVSPVR SD

Best Arabidopsis Sequence Match ( AT1G09140.1 )
(BLAST)

001: MSSRWNRTIY VGNLPGDIRK CEVEDLFYKY GPIVDIDLKI PPRPPGYAFV EFEDPRDADD AIYGRDGYDF DGCRLRVEIA HGGRRFSPSV DRYSSSYSAS
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRSQSRS KSRSRSRSNS PVSPVISG

Arabidopsis Description

SR30Serine/arginine-rich splicing factor SR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFR5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.