Factsheet for Bra029955.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68538	Canola	nucleus	91.15	84.04
Bra019595.1-P	Field mustard	nucleus	85.0	77.54
Bra017986.1-P	Field mustard	nucleus	84.23	77.11
AT3G49430.4	Thale cress	nucleus	84.23	73.0
KRH53616	Soybean	nucleus	70.77	69.96
KRH64312	Soybean	nucleus	70.77	68.91
VIT_16s0098g01020.t01	Wine grape	nucleus	65.0	67.6
GSMUA_Achr1P06160_001	Banana	nucleus	63.85	66.67
Bra018581.1-P	Field mustard	cytosol	56.15	62.93
Solyc03g082380.2.1	Tomato	nucleus	65.0	60.36
Bra018550.1-P	Field mustard	nucleus	53.08	52.87
PGSC0003DMT400008347	Potato	cytosol	64.23	52.02
Bra036267.1-P	Field mustard	nucleus	58.85	49.04
CDY61855	Canola	nucleus	93.46	41.12
Bra029777.1-P	Field mustard	nucleus	31.54	28.57
Bra003139.1-P	Field mustard	mitochondrion, nucleus	28.46	25.43
Bra023114.1-P	Field mustard	nucleus	30.77	25.32
Bra007004.1-P	Field mustard	nucleus	28.46	24.92
Bra005756.1-P	Field mustard	nucleus	21.15	23.91

Protein Annotations

EnsemblPlants:Bra029955.1	EnsemblPlants:Bra029955.1-P	EnsemblPlantsGene:Bra029955	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR43933	PANTHER:PTHR43933:SF5	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000254432A	UniProt:M4EMD5	MapMan:16.4.6.1	:

Description

AT3G49430 (E=4e-087) SRp34a | SRp34a (Ser/Arg-rich protein 34a); RNA binding / nucleic acid binding / nucleotide binding

Coordinates

chrA01:+:15242697..15244579

Molecular Weight (calculated)

29148.9 Da

IEP (calculated)

10.036

GRAVY (calculated)

-1.045

Length

260 amino acids

Sequence
(BLAST)

001: MSDRSSRSIY VGNLPGDIRE SEIEDLFYKY GRIVDIELKV PPRPPCYCFI EFEHPRDAKD AVDGRDGYNF DGCRLRVELS HGGRGQSSGD RRGGYGGGGG
101: YRGGGGGGGG GGGGSARFGV SRHSEFRVIV RGLPSSASWQ DLKDHMRKAG DVCFAEVTRD RDGAYGVVDY TNYDDMKYAI RKLDDTEFKN PWARGYIRVK
201: KYESSQSRSP SRSRSRSRSR GRDRSRSRSI SRSKSPRKDM RFNKAVSDCE SCQAEKDRMR

Best Arabidopsis Sequence Match ( AT3G49430.6 )
(BLAST)

001: MSGRFSRSIY VGNLPGDIRE HEIEDIFYKY GRIVDIELKV PPRPPCYCFV EFEHSRDAED AIKGRDGYNL DGCRLRVELA HGGRGQSSSD RRGGYGGGGS
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV

Arabidopsis Description

SR34ASerine/arginine-rich splicing factor SR34A [Source:UniProtKB/Swiss-Prot;Acc:A2RVS6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.