Factsheet for Bra023114.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000304.1-P
Bra012098.1-P
Bra014741.1-P
Bra023994.1-P
Bra024276.1-P
Bra024624.1-P
Bra030819.1-P
Bra039394.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37340.1	Bra024624.1-P	AT1G23860.1	18674533
AT2G37340.1	Bra030819.1-P	AT1G53720.1	16497658
AT2G37340.1	Bra000304.1-P	AT2G43370.1	15987817
AT2G37340.1	Bra039394.1-P	AT3G13570.1	18674533
AT2G37340.1	Bra012098.1-P	AT3G50670.1	18674533
AT2G37340.1	Bra014741.1-P	AT3G55460.1	18674533
AT2G37340.1	Bra014741.1-P	AT3G55460.1	21798944
AT2G37340.1	Bra023994.1-P	AT4G31580.1	18674533
AT2G37340.1	Bra024276.1-P	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46773	Canola	nucleus	98.42	98.42
AT2G37340.1	Thale cress	nucleus	83.54	91.03
Bra003139.1-P	Field mustard	mitochondrion, nucleus	74.05	80.41
Bra007004.1-P	Field mustard	nucleus	74.05	78.79
KRH67593	Soybean	endoplasmic reticulum	63.92	70.38
KRG95876	Soybean	nucleus	63.61	70.03
Bra029777.1-P	Field mustard	nucleus	59.18	65.16
PGSC0003DMT400060435	Potato	nucleus	61.39	64.67
KRH67596	Soybean	nucleus	60.13	63.55
Bra005756.1-P	Field mustard	nucleus	46.2	63.48
KRG95883	Soybean	nucleus	58.54	62.29
EES00292	Sorghum	nucleus	55.38	59.12
GSMUA_Achr10P...	Banana	nucleus	60.13	58.46
KXG21152	Sorghum	nucleus	57.59	58.33
VIT_08s0040g02860.t01	Wine grape	nucleus	49.05	58.27
Solyc09g005980.2.1	Tomato	nucleus	57.91	58.1
Solyc05g054920.2.1	Tomato	nucleus	61.71	57.86
PGSC0003DMT400061471	Potato	nucleus	57.28	57.46
Os05t0120100-01	Rice	mitochondrion, nucleus	57.59	56.35
Os01t0155600-01	Rice	nucleus	57.59	56.17
GSMUA_Achr6P15450_001	Banana	nucleus	59.18	55.49
Os03t0285900-01	Rice	nucleus	57.59	55.15
TraesCS1A01G108000.2	Wheat	nucleus	48.42	55.04
TraesCS1D01G111000.2	Wheat	nucleus	49.37	54.36
TraesCS1B01G065900.2	Wheat	nucleus	58.23	53.96
TraesCS1B01G130200.3	Wheat	nucleus	48.73	53.66
TraesCS1D01G051900.1	Wheat	nucleus	57.91	53.51
Zm00001d011004_P008	Maize	nucleus	56.96	53.25
TraesCS3B01G151100.1	Wheat	nucleus	54.43	53.25
TraesCS1A01G049700.1	Wheat	nucleus	57.59	53.22
KXG21387	Sorghum	nucleus	44.62	53.21
EES18924	Sorghum	nucleus	57.28	53.08
TraesCS3D01G134500.1	Wheat	nucleus	54.11	52.78
Zm00001d011005_P005	Maize	nucleus	58.86	52.69
HORVU1Hr1G024060.21	Barley	nucleus	49.68	52.51
TraesCS3A01G308000.1	Wheat	nucleus	54.43	51.65
KRH42195	Soybean	endoplasmic reticulum	43.99	50.55
HORVU1Hr1G009950.7	Barley	nucleus, plastid	58.54	50.27
Zm00001d037543_P001	Maize	nucleus	27.85	48.89
Zm00001d035552_P001	Maize	endoplasmic reticulum, extracellular, golgi	55.7	47.44
OQU77498	Sorghum	nucleus	15.51	44.14
KRH58317	Soybean	nucleus	30.06	43.38
Os05t0162600-01	Rice	nucleus	43.35	40.53
Bra018581.1-P	Field mustard	cytosol	25.95	35.34
Zm00001d035551_P007	Maize	nucleus	43.04	34.69
Bra036267.1-P	Field mustard	nucleus	32.59	33.01
Bra018550.1-P	Field mustard	nucleus	25.95	31.42
Bra029955.1-P	Field mustard	nucleus	25.32	30.77
Bra019595.1-P	Field mustard	nucleus	27.22	30.18
Bra017986.1-P	Field mustard	nucleus	25.95	28.87
KXG21391	Sorghum	nucleus	36.08	28.5

Protein Annotations

MapMan:16.4.6.5	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EnsemblPlantsGene:Bra023114	EnsemblPlants:Bra023114.1	EnsemblPlants:Bra023114.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0008270	GO:GO:0016607	InterPro:IPR000504
InterPro:IPR001878	InterPro:IPR012677	UniProt:M4E2W3	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098
PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF21	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	SignalP:SignalP-noTM	UniParc:UPI000253FF9A
InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:	:

Description

AT2G37340 (E=5e-121) RSZ33, ATRSZ33 | RSZ33; nucleic acid binding / nucleotide binding / zinc ion binding

Coordinates

chrA03:-:8749467..8751533

Molecular Weight (calculated)

35948.5 Da

IEP (calculated)

10.474

GRAVY (calculated)

-1.329

Length

316 amino acids

Sequence
(BLAST)

001: MLLLCWVCEV LSLSPKNSIW KMPRYDDRYG NTRLYVGHLS SRTRTRDLER LFNRYGRVRD VDMKRDYAFV EFSDPRDADD ARHYLDGRDF DGSRITVEFS
101: RGAPRGSRDY DSRGPPPGSG RCFNCGLDGH WARDCTAGDW KNKCYRCGER GHIERNCKNS PKKLRRSGSY SRSPVRSRSP RRRRSPSRSR SLSRSRSYSR
201: SRSPVKRRER SVEERSRSPK RMEDSLSPRG RDRSPIMDDE GSPRIIDGSP PPSPKLEKPA GSDHDGGSSP QDNGNGRNTV ASPAVGRSAD SPREDRSPVD
301: DDYEANRASP RGSESP

Best Arabidopsis Sequence Match ( AT2G37340.1 )
(BLAST)

001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP

Arabidopsis Description

RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.