Factsheet for Os01t0155600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0316600-01
Os02t0252100-02
Os02t0610600-01
Os02t0789400-01
Os03t0344100-02
Os03t0363800-01
Os03t0374575-01
Os05t0364600-01
Os06t0187900-02
Os06t0670400-00
Os06t0670500-01
Os07t0623300-01
Os07t0633200-02
Os07t0673500-01
Os09t0513700-01
Os10t0115600-02
Os11t0704700-01
Os12t0572400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37340.1	Os01t0316600-01	AT1G02840.1	18674533
AT2G37340.1	Os03t0344100-02	AT1G02840.1	18674533
AT2G37340.1	Os05t0364600-01	AT1G02840.1	18674533
AT2G37340.1	Os07t0673500-01	AT1G02840.1	18674533
AT2G37340.1	Os06t0670400-00	AT1G53720.1	16497658
AT2G37340.1	Os06t0670500-01	AT1G53720.1	16497658
AT2G37340.1	Os09t0513700-01	AT2G43370.1	15987817
AT2G37340.1	Os03t0374575-01	AT3G13570.1	18674533
AT2G37340.1	Os07t0633200-02	AT3G13570.1	18674533
AT2G37340.1	Os10t0115600-02	AT3G50670.1	18674533
AT2G37340.1	Os02t0252100-02	AT3G55460.1	18674533
AT2G37340.1	Os11t0704700-01	AT3G55460.1	18674533
AT2G37340.1	Os12t0572400-01	AT3G55460.1	18674533
AT2G37340.1	Os02t0252100-02	AT3G55460.1	21798944
AT2G37340.1	Os11t0704700-01	AT3G55460.1	21798944
AT2G37340.1	Os12t0572400-01	AT3G55460.1	21798944
AT2G37340.1	Os02t0610600-01	AT4G31580.1	18674533
AT2G37340.1	Os02t0789400-01	AT4G31580.1	18674533
AT2G37340.1	Os06t0187900-02	AT4G31580.1	18674533
AT2G37340.1	Os03t0363800-01	AT5G18810.1	18674533
AT2G37340.1	Os07t0623300-01	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G151100.1	Wheat	nucleus	83.95	84.21
TraesCS3D01G134500.1	Wheat	nucleus	82.72	82.72
EES00292	Sorghum	nucleus	75.31	82.43
TraesCS3A01G308000.1	Wheat	nucleus	83.95	81.68
KRH67593	Soybean	endoplasmic reticulum	59.26	66.9
KRG95876	Soybean	nucleus	58.95	66.55
PGSC0003DMT400060435	Potato	nucleus	61.42	66.33
KRH67596	Soybean	nucleus	58.33	63.21
Os05t0120100-01	Rice	mitochondrion, nucleus	62.65	62.85
CDX80835	Canola	nucleus	50.93	62.26
GSMUA_Achr10P...	Banana	nucleus	62.35	62.15
Os03t0285900-01	Rice	nucleus	63.27	62.12
CDX79732	Canola	nucleus	55.86	61.77
VIT_08s0040g02860.t01	Wine grape	nucleus	50.31	61.28
CDY11223	Canola	nucleus	49.38	60.84
CDX78183	Canola	nucleus	52.78	60.42
KRG95883	Soybean	nucleus	55.25	60.27
Bra005756.1-P	Field mustard	nucleus	42.59	60.0
GSMUA_Achr6P15450_001	Banana	nucleus	62.35	59.94
AT3G53500.2	Thale cress	mitochondrion, nucleus	52.47	59.86
CDX73550	Canola	nucleus	52.47	59.86
AT2G37340.1	Thale cress	nucleus	53.4	59.66
Solyc05g054920.2.1	Tomato	nucleus	61.42	59.05
Solyc09g005980.2.1	Tomato	nucleus	57.41	59.05
CDY07586	Canola	mitochondrion, nucleus	52.47	59.03
CDY52755	Canola	mitochondrion, nucleus	52.47	58.42
Bra003139.1-P	Field mustard	mitochondrion, nucleus	52.47	58.42
PGSC0003DMT400061471	Potato	nucleus	56.79	58.41
CDY46773	Canola	nucleus	56.17	57.59
Bra023114.1-P	Field mustard	nucleus	56.17	57.59
Bra007004.1-P	Field mustard	nucleus	52.78	57.58
KRH42195	Soybean	endoplasmic reticulum	41.05	48.36
Os05t0162600-01	Rice	nucleus	45.99	44.08
KRH58317	Soybean	nucleus	29.01	42.92
Os03t0344100-02	Rice	mitochondrion, nucleus	28.4	32.17
Os05t0364600-01	Rice	nucleus	30.86	31.35
Os07t0673500-01	Rice	nucleus	27.47	30.07
Os01t0316600-01	Rice	plastid	6.48	16.94

Protein Annotations

MapMan:16.4.6.5	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EntrezGene:4324080	EMBL:AK060171	ProteinID:BAD61423.1
ProteinID:BAF03980.1	ProteinID:BAS70480.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os01g0155600
EnsemblPlants:Os01t0155600-01	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147
PANTHER:PTHR23147:SF39	UniProt:Q5ZCD9	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360
SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI0000450572	RefSeq:XP_015618527.1	RefSeq:XP_015618532.1	InterPro:Znf_CCHC
InterPro:Znf_CCHC_sf	SEG:seg	:	:	:	:

Description

Similar to Splicing factor RSZ33. (Os01t0155600-01);Similar to Splicing factor RSZ33. (Os01t0155600-02)

Coordinates

chr1:-:2986329..2989280

Molecular Weight (calculated)

36895.1 Da

IEP (calculated)

11.762

GRAVY (calculated)

-1.697

Length

324 amino acids

Sequence
(BLAST)

001: MPRYDDRDRY DDRYGGNTRL YVGRLSSRTR TRDLEDLFGR YGRVRYVDMK HEFAFVEFSD ARDADEARYN LDGRDFDGSR MIVEFAKGVP RGPGGSREYM
101: GRGPPPGSGR CFNCGIDGHW ARDCKAGDWK NRCYRCGDRG HIERDCRNSP KNLKRGRSYS RSPSPRRGRS RGRSYSRSRS RSYSRSQSPR RDSRNERRSR
201: SPRDSRSPRG SPRDSRSPRG SPRDSRSPKG SPRDTQSPRG SPRDSRSPRR SASPPNGRNR SPTPNASRSP APRDSRSPMR ADSRSPADHE RRDMSTAANG
301: RSPSPRDYED NGNHRASPRG SASP

Best Arabidopsis Sequence Match ( AT3G53500.2 )
(BLAST)

001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FSDPRDADDA RYYLDGRDFD GSRITVEASR GAPRGSRDNG SRGPPPGSGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP SPKKARQGGS YSRSPVKSRS PRRRRSPSRS RSYSRGRSYS RSRSPVRREK SVEDRSRSPK
201: AMERSVSPKG RDQSLSPDRK VIDASPKRGS DYDGSPKENG NGRNSASPIV GGGESPVGLN GQDRSPIDDE AELSRPSPKG SESP

Arabidopsis Description

RS2Z32RSZ32 [Source:UniProtKB/TrEMBL;Acc:A0A178V7M8]
SUBAcon: [nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.