Factsheet for Os03t0363800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0155600-01
Os01t0316600-01
Os02t0252100-02
Os03t0285900-01
Os03t0344100-02
Os03t0363800-01
Os03t0374575-01
Os05t0120100-01
Os05t0162600-01
Os05t0364600-01
Os06t0670400-00
Os06t0670500-01
Os07t0623300-01
Os07t0633200-02
Os07t0673500-01
Os09t0513700-01
Os11t0704700-01
Os12t0572400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18810.1	Os01t0316600-01	AT1G02840.1	18674533
AT5G18810.1	Os03t0344100-02	AT1G02840.1	18674533
AT5G18810.1	Os05t0364600-01	AT1G02840.1	18674533
AT5G18810.1	Os07t0673500-01	AT1G02840.1	18674533
AT5G18810.1	Os01t0316600-01	AT1G09140.1	18674533
AT5G18810.1	Os03t0344100-02	AT1G09140.1	18674533
AT5G18810.1	Os05t0364600-01	AT1G09140.1	18674533
AT5G18810.1	Os07t0673500-01	AT1G09140.1	18674533
AT5G18810.1	Os06t0670400-00	AT1G53720.1	16497658
AT5G18810.1	Os06t0670500-01	AT1G53720.1	16497658
AT5G18810.1	Os01t0155600-01	AT2G37340.1	18674533
AT5G18810.1	Os03t0285900-01	AT2G37340.1	18674533
AT5G18810.1	Os05t0120100-01	AT2G37340.1	18674533
AT5G18810.1	Os05t0162600-01	AT2G37340.1	18674533
AT5G18810.1	Os09t0513700-01	AT2G43370.1	15987817
AT5G18810.1	Os03t0374575-01	AT3G13570.1	18674533
AT5G18810.1	Os07t0633200-02	AT3G13570.1	18674533
AT5G18810.1	Os02t0252100-02	AT3G55460.1	18674533
AT5G18810.1	Os11t0704700-01	AT3G55460.1	18674533
AT5G18810.1	Os12t0572400-01	AT3G55460.1	18674533
AT5G18810.1	Os03t0363800-01	AT5G18810.1	18674533
AT5G18810.1	Os07t0623300-01	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G162900.1	Wheat	nucleus	75.72	77.31
TraesCS4B01G156200.1	Wheat	nucleus	74.9	76.15
KXG39307	Sorghum	nucleus	75.31	75.93
TraesCS4A01G141800.2	Wheat	nucleus	76.13	74.0
HORVU4Hr1G045510.3	Barley	nucleus	72.02	73.22
Zm00001d029256_P002	Maize	nucleus	72.84	72.24
Solyc01g080660.2.1	Tomato	nucleus	44.03	64.46
KRH02172	Soybean	nucleus	56.38	54.8
KRH50944	Soybean	nucleus	54.73	54.73
VIT_14s0030g00480.t01	Wine grape	nucleus	58.85	49.83
AT5G18810.1	Thale cress	nucleus	48.15	49.58
PGSC0003DMT400016115	Potato	nucleus	52.26	47.74
Os03t0374575-01	Rice	nucleus	37.04	41.47
Os07t0633200-02	Rice	nucleus	35.8	40.85
Os02t0252100-02	Rice	nucleus	36.63	33.58
Os12t0572400-01	Rice	nucleus	34.98	32.32
GSMUA_Achr8P00220_001	Banana	extracellular	26.34	28.96
Os03t0388000-01	Rice	mitochondrion, nucleus	19.75	23.41
Os07t0623300-01	Rice	nucleus	25.93	22.91
Os08t0486200-02	Rice	nucleus	25.51	21.45
Os11t0704700-01	Rice	nucleus	32.92	15.66

Protein Annotations

MapMan:16.4.6.2	Gene3D:3.30.70.330	EntrezGene:4332903	ProteinID:ABF96107.1	EMBL:AK103387	ProteinID:BAF12082.1
ProteinID:BAS84304.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0016020	GO:GO:0016021
GO:GO:0016607	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os03g0363800	EnsemblPlants:Os03t0363800-01
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23147	PANTHER:PTHR23147:SF7	UniProt:Q10L03	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0000DB4A0F	RefSeq:XP_015632345.1	SEG:seg

Description

Similar to SC35-like splicing factor SCL28, 28 kD. (Os03t0363800-01)

Coordinates

chr3:+:14176397..14181013

Molecular Weight (calculated)

27783.3 Da

IEP (calculated)

11.302

GRAVY (calculated)

-1.407

Length

243 amino acids

Sequence
(BLAST)

001: MAGYRSRSRS YSPQPRRRYS RSPPRYKRYD DPRDRYPRGG GGGGGGGEGP RRGYGRPPAP TGLLVRNISL TARPEDIRIP FEQFGPVKDV YLPRNFHTRE
101: LRGFGFVKFR YPEDAAVAKQ ELNHQVIGGR EISIVFAEEN RKTPQEMRMR TRTSGRYMDG SHRRRSVSRS PRSRYHSYSP SPSPARRDYR DHRDDYSPGE
201: SLSPHGQDKR HHRSNGRSAS PDELERHVSP SNNGHGPPVD GKS

Best Arabidopsis Sequence Match ( AT5G18810.2 )
(BLAST)

001: MARARSRSRS YSPRPRDRSP PRERKGYDDN RLRERPSSRD HESSGPSGLL IRNLPLDARP NDLRDSFERF GPLKDIYLPR NYYTGEPRGF GFVKYRYAED
101: AAEAMKRMNH KVIGGREIAI VFAEENRKTP QEMRTTNGTS GRHGDYKRTS HRSPRRRYRS HSRSRSPPRR ESRHSKVRED DLYSPRRRSR SISRSPLPRN
201: EREYKSRNCR SPREERVLTP IRSRCLSRSR SRSLR

Arabidopsis Description

SCL28Serine/arginine-rich SC35-like splicing factor SCL28 [Source:UniProtKB/Swiss-Prot;Acc:Q1PDV2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.