Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 3
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG32406 | Sorghum | cytosol | 41.13 | 19.69 |
| Bra018581.1-P | Field mustard | cytosol | 35.48 | 18.97 |
| TraesCS3D01G260200.1 | Wheat | cytosol | 37.9 | 18.43 |
| TraesCS3B01G293100.1 | Wheat | cytosol | 37.9 | 18.43 |
| TraesCS3A01G260000.1 | Wheat | cytosol | 37.1 | 18.04 |
| CDY66028 | Canola | cytosol | 35.48 | 17.39 |
| Zm00001d040672_P013 | Maize | nucleus | 40.32 | 17.06 |
| Os03t0344100-02 | Rice | mitochondrion, nucleus | 38.71 | 16.78 |
| Solyc01g099810.2.1 | Tomato | nucleus | 35.48 | 16.67 |
| Bra018550.1-P | Field mustard | nucleus | 34.68 | 16.48 |
| AT1G09140.1 | Thale cress | cytosol | 34.68 | 16.04 |
| Os05t0364600-01 | Rice | nucleus | 41.13 | 15.99 |
| KRG92904 | Soybean | nucleus | 35.48 | 15.94 |
| Os07t0673500-01 | Rice | nucleus | 37.9 | 15.88 |
| VIT_14s0060g02290.t01 | Wine grape | nucleus | 36.29 | 15.62 |
| HORVU3Hr1G064550.7 | Barley | nucleus, peroxisome | 41.13 | 15.18 |
| CDX95008 | Canola | nucleus | 38.71 | 15.14 |
| PGSC0003DMT400037966 | Potato | cytosol, extracellular, nucleus | 34.68 | 14.73 |
| AT4G02430.4 | Thale cress | nucleus | 34.68 | 14.73 |
| KRH68188 | Soybean | nucleus | 34.68 | 14.38 |
| CDX91319 | Canola | nucleus | 34.68 | 14.38 |
| VIT_07s0005g00320.t01 | Wine grape | nucleus | 35.48 | 14.29 |
| CDY22050 | Canola | nucleus | 34.68 | 13.92 |
| Bra036267.1-P | Field mustard | nucleus | 34.68 | 13.78 |
| CDX97264 | Canola | nucleus | 33.87 | 13.77 |
| KRG96443 | Soybean | nucleus | 34.68 | 13.74 |
| CDY50385 | Canola | nucleus | 33.87 | 13.64 |
| AT1G02840.1 | Thale cress | nucleus | 33.06 | 13.53 |
| GSMUA_Achr8P10150_001 | Banana | nucleus | 37.1 | 13.14 |
| Solyc09g075090.1.1 | Tomato | nucleus | 32.26 | 13.11 |
| PGSC0003DMT400063701 | Potato | nucleus | 34.68 | 13.03 |
| PGSC0003DMT400029666 | Potato | nucleus | 33.06 | 13.02 |
| GSMUA_Achr11P... | Banana | nucleus | 36.29 | 13.01 |
| Os05t0120100-01 | Rice | mitochondrion, nucleus | 16.94 | 6.5 |
| Os01t0155600-01 | Rice | nucleus | 16.94 | 6.48 |
| Os03t0285900-01 | Rice | nucleus | 16.94 | 6.36 |
| Os05t0162600-01 | Rice | nucleus | 16.13 | 5.92 |
| Solyc06g009060.2.1 | Tomato | nucleus | 4.84 | 2.29 |
Protein Annotations
| EnsemblPlants:Os01t0316600-01 | EnsemblPlantsGene:Os01g0316600 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR43933 | PANTHER:PTHR43933:SF1 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:BAS71818.1 | SEG:seg |
| SUPFAM:SSF54928 | UniParc:UPI000393A15E | UniProt:A0A0P0V1N4 | MapMan:16.4.6.1 | : | : |
Description
Similar to pre-mRNA-splicing factor SF2. (Os01t0316600-01)
Coordinates
chr1:+:11958911..11964676
Molecular Weight (calculated)
13966.1 Da
IEP (calculated)
10.245
GRAVY (calculated)
0.002
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: PLSLSPSGAF VGNHREKPRN PLPAFPFFFP FFSARVFSSI SPIIIACGGR LAAVPFPEIL RRAPPFLSVC LQETMSRRNS RTIYVGNLPG DIREREVEDL
101: FYKYGRILDI DLKIPPRPPG YAFV
101: FYKYGRILDI DLKIPPRPPG YAFV
001: MSSRSSRTIY VGNLPGDIRE REVEDLFSKY GPVVQIDLKI PPRPPGYAFV EFEDARDADD AIYGRDGYDF DGHHLRVELA HGGRRSSHDA RGSYSGRGRG
101: GRGGGDGGGR ERGPSRRSEY RVVVSGLPSS ASWQDLKDHM RKGGEVCFSQ VFRDGRGTTG IVDYTSYEDM KYAIKKAR
101: GRGGGDGGGR ERGPSRRSEY RVVVSGLPSS ASWQDLKDHM RKGGEVCFSQ VFRDGRGTTG IVDYTSYEDM KYAIKKAR
Arabidopsis Description
SR34bRNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT4G02430]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.