Factsheet for Os05t0162600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0316600-01
Os02t0252100-02
Os02t0610600-01
Os02t0789400-01
Os03t0344100-02
Os03t0363800-01
Os03t0374575-01
Os05t0364600-01
Os06t0187900-02
Os06t0670400-00
Os06t0670500-01
Os07t0623300-01
Os07t0633200-02
Os07t0673500-01
Os09t0513700-01
Os10t0115600-02
Os11t0704700-01
Os12t0572400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37340.1	Os01t0316600-01	AT1G02840.1	18674533
AT2G37340.1	Os03t0344100-02	AT1G02840.1	18674533
AT2G37340.1	Os05t0364600-01	AT1G02840.1	18674533
AT2G37340.1	Os07t0673500-01	AT1G02840.1	18674533
AT2G37340.1	Os06t0670400-00	AT1G53720.1	16497658
AT2G37340.1	Os06t0670500-01	AT1G53720.1	16497658
AT2G37340.1	Os09t0513700-01	AT2G43370.1	15987817
AT2G37340.1	Os03t0374575-01	AT3G13570.1	18674533
AT2G37340.1	Os07t0633200-02	AT3G13570.1	18674533
AT2G37340.1	Os10t0115600-02	AT3G50670.1	18674533
AT2G37340.1	Os02t0252100-02	AT3G55460.1	18674533
AT2G37340.1	Os11t0704700-01	AT3G55460.1	18674533
AT2G37340.1	Os12t0572400-01	AT3G55460.1	18674533
AT2G37340.1	Os02t0252100-02	AT3G55460.1	21798944
AT2G37340.1	Os11t0704700-01	AT3G55460.1	21798944
AT2G37340.1	Os12t0572400-01	AT3G55460.1	21798944
AT2G37340.1	Os02t0610600-01	AT4G31580.1	18674533
AT2G37340.1	Os02t0789400-01	AT4G31580.1	18674533
AT2G37340.1	Os06t0187900-02	AT4G31580.1	18674533
AT2G37340.1	Os03t0363800-01	AT5G18810.1	18674533
AT2G37340.1	Os07t0623300-01	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67593	Soybean	endoplasmic reticulum	42.9	50.52
KRG95876	Soybean	nucleus	42.31	49.83
CDY11223	Canola	nucleus	37.87	48.67
PGSC0003DMT400060435	Potato	nucleus	42.9	48.33
CDX80835	Canola	nucleus	37.87	48.3
Zm00001d037543_P001	Maize	nucleus	25.15	47.22
KXG21387	Sorghum	nucleus	36.98	47.17
KRH67596	Soybean	nucleus	41.72	47.16
KRG95883	Soybean	nucleus	40.83	46.46
CDX79732	Canola	nucleus	40.24	46.42
Bra005756.1-P	Field mustard	nucleus	31.36	46.09
Os01t0155600-01	Rice	nucleus	44.08	45.99
GSMUA_Achr10P...	Banana	nucleus	44.08	45.85
AT3G53500.2	Thale cress	mitochondrion, nucleus	38.46	45.77
TraesCS1D01G111000.2	Wheat	nucleus	38.76	45.64
CDX78183	Canola	nucleus	38.17	45.58
TraesCS1A01G108000.2	Wheat	nucleus	37.28	45.32
TraesCS1B01G130200.3	Wheat	nucleus	38.46	45.3
AT2G37340.1	Thale cress	nucleus	38.76	45.17
GSMUA_Achr6P15450_001	Banana	nucleus	44.97	45.1
CDX73550	Canola	nucleus	37.87	45.07
Os05t0120100-01	Rice	mitochondrion, nucleus	42.6	44.58
CDY07586	Canola	mitochondrion, nucleus	37.87	44.44
Solyc09g005980.2.1	Tomato	nucleus	41.42	44.44
OQU77498	Sorghum	nucleus	14.5	44.14
PGSC0003DMT400061471	Potato	nucleus	41.12	44.13
Bra003139.1-P	Field mustard	mitochondrion, nucleus	37.87	43.99
CDY52755	Canola	mitochondrion, nucleus	37.87	43.99
CDY46773	Canola	nucleus	40.83	43.67
Os03t0285900-01	Rice	nucleus	42.6	43.64
HORVU1Hr1G024060.21	Barley	nucleus	38.46	43.48
Bra007004.1-P	Field mustard	nucleus	38.17	43.43
Bra023114.1-P	Field mustard	nucleus	40.53	43.35
Solyc05g054920.2.1	Tomato	nucleus	42.6	42.73
VIT_08s0040g02860.t01	Wine grape	nucleus	32.54	41.35
KRH42195	Soybean	endoplasmic reticulum	31.07	38.18
KRH58317	Soybean	nucleus	20.71	31.96
KXG21391	Sorghum	nucleus	29.88	25.25
Os03t0344100-02	Rice	mitochondrion, nucleus	21.3	25.17
Os05t0364600-01	Rice	nucleus	21.89	23.2
Os07t0673500-01	Rice	nucleus	19.82	22.64
Os01t0316600-01	Rice	plastid	5.92	16.13

Protein Annotations

MapMan:16.4.6.5	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EntrezGene:4337897	ProteinID:AAT07654.1	EMBL:AK063518
EMBL:AK121854	ProteinID:BAF16645.1	ProteinID:BAS92415.1	ProteinID:EEE62432.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os05g0162600	EnsemblPlants:Os05t0162600-01	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102
PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF39	UniProt:Q75IR8	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI000035E012	RefSeq:XP_015638154.1
InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:	:

Description

Similar to Splicing factor RSZ33. (Os05t0162600-01)

Coordinates

chr5:-:3674074..3678244

Molecular Weight (calculated)

39021.2 Da

IEP (calculated)

10.074

GRAVY (calculated)

-1.616

Length

338 amino acids

Sequence
(BLAST)

001: MSRYVDPNDR YEPRGRNSRL YVGHISLRTR AEDLENLFSR YGRVRFVDLK NEYGFVEFSD PRDANDARLD LDGRKYDGSD IIVQFARGVE RGLGGSRGYK
101: ARPAHGSDHC FNCGMEGHWH RNCTAGDWTN RCYGCGERGH ILRECKNSPK DLKQERGYSR SRSPRRRRSP SYGKSGPPSH WGSHGADREE RLHSRRDGRG
201: YSRSPRRHDS PSNQRNHSPR RYALPSNERY DGTRRYASPS YGRDRSPGGN ALPANGRSHN LTSDGMNPSP RERDDQNGSH RRGDNDYLPS KRDDQNGSYR
301: RGDSDYLSRE RDDYLSRGRD DQNGSHRRGD SDYLSRDR

Best Arabidopsis Sequence Match ( AT3G53500.2 )
(BLAST)

001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FSDPRDADDA RYYLDGRDFD GSRITVEASR GAPRGSRDNG SRGPPPGSGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP SPKKARQGGS YSRSPVKSRS PRRRRSPSRS RSYSRGRSYS RSRSPVRREK SVEDRSRSPK
201: AMERSVSPKG RDQSLSPDRK VIDASPKRGS DYDGSPKENG NGRNSASPIV GGGESPVGLN GQDRSPIDDE AELSRPSPKG SESP

Arabidopsis Description

RS2Z32RSZ32 [Source:UniProtKB/TrEMBL;Acc:A0A178V7M8]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.