Factsheet for PGSC0003DMT400060435

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010908
PGSC0003DMT400011164
PGSC0003DMT400011166
PGSC0003DMT400016115
PGSC0003DMT400029666
PGSC0003DMT400032709
PGSC0003DMT400037966
PGSC0003DMT400038558
PGSC0003DMT400055636
PGSC0003DMT400056014
PGSC0003DMT400067677
PGSC0003DMT400069100
PGSC0003DMT400075974
PGSC0003DMT400081835

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37340.1	PGSC0003DMT400029666	AT1G02840.1	18674533
AT2G37340.1	PGSC0003DMT400037966	AT1G02840.1	18674533
AT2G37340.1	PGSC0003DMT400011164	AT1G53720.1	16497658
AT2G37340.1	PGSC0003DMT400011166	AT1G53720.1	16497658
AT2G37340.1	PGSC0003DMT400056014	AT1G53720.1	16497658
AT2G37340.1	PGSC0003DMT400069100	AT1G53720.1	16497658
AT2G37340.1	PGSC0003DMT400055636	AT2G43370.1	15987817
AT2G37340.1	PGSC0003DMT400010908	AT3G13570.1	18674533
AT2G37340.1	PGSC0003DMT400081835	AT3G13570.1	18674533
AT2G37340.1	PGSC0003DMT400038558	AT3G50670.1	18674533
AT2G37340.1	PGSC0003DMT400067677	AT4G31580.1	18674533
AT2G37340.1	PGSC0003DMT400075974	AT4G31580.1	18674533
AT2G37340.1	PGSC0003DMT400016115	AT5G18810.1	18674533
AT2G37340.1	PGSC0003DMT400032709	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g054920.2.1	Tomato	nucleus	98.33	87.54
CDX79732	Canola	nucleus	64.67	66.21
CDX78183	Canola	nucleus	62.33	66.08
KXG21152	Sorghum	nucleus	68.67	66.03
AT2G37340.1	Thale cress	nucleus	63.33	65.52
CDX73550	Canola	nucleus	62.0	65.49
AT3G53500.2	Thale cress	mitochondrion, nucleus	61.67	65.14
CDX80835	Canola	nucleus	57.33	64.91
EES00292	Sorghum	nucleus	63.67	64.53
CDY11223	Canola	nucleus	56.0	63.88
CDY07586	Canola	mitochondrion, nucleus	60.67	63.19
Bra007004.1-P	Field mustard	nucleus	62.33	62.96
Os05t0120100-01	Rice	mitochondrion, nucleus	67.67	62.85
CDY52755	Canola	mitochondrion, nucleus	60.67	62.54
Bra003139.1-P	Field mustard	mitochondrion, nucleus	60.67	62.54
Bra005756.1-P	Field mustard	nucleus	47.67	62.17
GSMUA_Achr10P...	Banana	nucleus	67.0	61.85
Os01t0155600-01	Rice	nucleus	66.33	61.42
Bra023114.1-P	Field mustard	nucleus	64.67	61.39
CDY46773	Canola	nucleus	64.33	61.08
Os03t0285900-01	Rice	nucleus	66.67	60.61
PGSC0003DMT400061471	Potato	nucleus	62.67	59.68
GSMUA_Achr6P15450_001	Banana	nucleus	67.0	59.64
TraesCS1B01G065900.2	Wheat	nucleus	67.33	59.24
TraesCS3B01G151100.1	Wheat	nucleus	63.67	59.13
TraesCS3D01G134500.1	Wheat	nucleus	63.67	58.95
EES18924	Sorghum	nucleus	67.0	58.94
TraesCS1A01G049700.1	Wheat	nucleus	67.0	58.77
TraesCS1D01G051900.1	Wheat	nucleus	67.0	58.77
Zm00001d011004_P008	Maize	nucleus	65.67	58.28
Zm00001d011005_P005	Maize	nucleus	67.67	57.51
TraesCS3A01G308000.1	Wheat	nucleus	63.67	57.36
TraesCS1A01G108000.2	Wheat	nucleus	51.33	55.4
TraesCS1D01G111000.2	Wheat	nucleus	52.67	55.05
HORVU1Hr1G024060.21	Barley	nucleus	54.67	54.85
HORVU1Hr1G009950.7	Barley	nucleus, plastid	67.0	54.62
TraesCS1B01G130200.3	Wheat	nucleus	52.0	54.36
Zm00001d035552_P001	Maize	endoplasmic reticulum, extracellular, golgi	65.33	52.83
KXG21387	Sorghum	nucleus	46.33	52.45
Zm00001d037543_P001	Maize	nucleus	30.0	50.0
OQU77498	Sorghum	nucleus	17.0	45.95
Os05t0162600-01	Rice	nucleus	48.33	42.9
Zm00001d035551_P007	Maize	nucleus	46.33	35.46
PGSC0003DMT400029666	Potato	nucleus	32.33	30.79
KXG21391	Sorghum	nucleus	38.67	29.0
PGSC0003DMT400037966	Potato	cytosol, extracellular, nucleus	27.67	28.42
PGSC0003DMT400008347	Potato	cytosol	23.33	21.81
PGSC0003DMT400063701	Potato	nucleus	22.33	20.3

Protein Annotations

EntrezGene:102594094	MapMan:16.4.6.5	Gene3D:3.30.70.330	Gene3D:4.10.60.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677
UniProt:M1C5U9	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	EnsemblPlantsGene:PGSC0003DMG402023504	PGSC:PGSC0003DMG402023504
EnsemblPlants:PGSC0003DMT400060435	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF39	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI000295616E
RefSeq:XP_006345907.1	RefSeq:XP_006345908.1	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:

Description

Arginine/serine-rich splicing factor [Source:PGSC_GENE;Acc:PGSC0003DMG402023504]

Coordinates

chr5:+:50636730..50640659

Molecular Weight (calculated)

34082.9 Da

IEP (calculated)

10.599

GRAVY (calculated)

-1.632

Length

300 amino acids

Sequence
(BLAST)

001: MPRYDDRYGG TRLYVGHLSS RTRSRDLEDV FSRYGRVRDV DMKRDYAFVE FSDPRDADDA RYGLNGRDVD GSRVIVEFAK GVPRGPGGSR EFGGRGPPPG
101: TGRCFNCGID GHWARDCKAG DWKNKCYRCG DRGHIERNCQ NSPKKLKRDR SYSRSPSPRR GRSRSRSYSR GRSYSRSRSP VKRDRSIERE EKRSRSPRQH
201: RPSPPPSKGR KHSPSPDERS PQERGTPSPR DDRATNGSDR SRSPKDDARM DERGDISPVE ENGRSRSNSP IHREDRSPVE DGSPTGDYEN HGSPRGSESP

Best Arabidopsis Sequence Match ( AT3G53500.2 )
(BLAST)

001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FSDPRDADDA RYYLDGRDFD GSRITVEASR GAPRGSRDNG SRGPPPGSGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP SPKKARQGGS YSRSPVKSRS PRRRRSPSRS RSYSRGRSYS RSRSPVRREK SVEDRSRSPK
201: AMERSVSPKG RDQSLSPDRK VIDASPKRGS DYDGSPKENG NGRNSASPIV GGGESPVGLN GQDRSPIDDE AELSRPSPKG SESP

Arabidopsis Description

RS2Z32RSZ32 [Source:UniProtKB/TrEMBL;Acc:A0A178V7M8]
SUBAcon: [nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.