Factsheet for PGSC0003DMT400032709

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010908
PGSC0003DMT400011164
PGSC0003DMT400011166
PGSC0003DMT400016115
PGSC0003DMT400029666
PGSC0003DMT400037966
PGSC0003DMT400055636
PGSC0003DMT400056014
PGSC0003DMT400060435
PGSC0003DMT400061471
PGSC0003DMT400069100
PGSC0003DMT400081835

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64200.2	PGSC0003DMT400029666	AT1G02840.1	18674533
AT5G64200.2	PGSC0003DMT400037966	AT1G02840.1	18674533
AT5G64200.2	PGSC0003DMT400011164	AT1G53720.1	16497658
AT5G64200.2	PGSC0003DMT400011166	AT1G53720.1	16497658
AT5G64200.2	PGSC0003DMT400056014	AT1G53720.1	16497658
AT5G64200.2	PGSC0003DMT400069100	AT1G53720.1	16497658
AT5G64200.2	PGSC0003DMT400060435	AT2G37340.1	18674533
AT5G64200.2	PGSC0003DMT400061471	AT2G37340.1	18674533
AT5G64200.2	PGSC0003DMT400055636	AT2G43370.1	15987817
AT5G64200.2	PGSC0003DMT400010908	AT3G13570.1	18674533
AT5G64200.2	PGSC0003DMT400081835	AT3G13570.1	18674533
AT5G64200.2	PGSC0003DMT400016115	AT5G18810.1	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g105140.2.1	Tomato	nucleus	96.06	96.06
HORVU2Hr1G029640.1	Barley	mitochondrion	41.73	76.26
KRH58277	Soybean	nucleus	74.02	70.41
VIT_12s0142g00110.t01	Wine grape	nucleus	70.47	70.2
KRH42160	Soybean	nucleus	73.23	69.66
PGSC0003DMT400045694	Potato	nucleus	70.08	68.99
Zm00001d006906_P010	Maize	mitochondrion	66.54	67.06
KXG36736	Sorghum	nucleus	65.75	66.8
Zm00001d022189_P002	Maize	nucleus	62.2	62.2
TraesCS2D01G169700.5	Wheat	nucleus	65.35	60.36
Os07t0623300-01	Rice	nucleus	64.17	59.27
KXG39239	Sorghum	nucleus	54.72	58.9
Bra024276.1-P	Field mustard	nucleus	63.78	57.86
TraesCS2A01G162700.3	Wheat	nucleus	51.18	54.62
TraesCS2B01G188600.1	Wheat	nucleus, plastid	58.27	54.41
AT5G64200.2	Thale cress	nucleus	62.2	52.15
HORVU2Hr1G029630.1	Barley	plastid	26.77	50.0
CDX84503	Canola	nucleus	46.85	43.91
PGSC0003DMT400081835	Potato	nucleus	27.56	28.23
CDY43799	Canola	vacuole	33.86	26.63
PGSC0003DMT400010908	Potato	nucleus	27.95	25.36
PGSC0003DMT400016115	Potato	nucleus	24.8	23.68
Zm00001d029380_P002	Maize	cytosol, nucleus, plasma membrane	39.37	23.15

Protein Annotations

EntrezGene:102583092	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1AXV5	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG401012560	PGSC:PGSC0003DMG401012560	EnsemblPlants:PGSC0003DMT400032709	PFscan:PS50102	PANTHER:PTHR23147	PANTHER:PTHR23147:SF42
InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928
UniParc:UPI00029674C8	RefSeq:XP_015166141.1	SEG:seg	:	:	:

Description

Serine/arginine rich splicing factor [Source:PGSC_GENE;Acc:PGSC0003DMG401012560]

Coordinates

chr1:-:81865033..81871829

Molecular Weight (calculated)

29787.6 Da

IEP (calculated)

11.457

GRAVY (calculated)

-1.450

Length

254 amino acids

Sequence
(BLAST)

001: MSHFGRTGPP DIADTYSLLV LNITFRTSAD DLFPLFDTYG KVVDIFIPRD RRTGESRGFA FVRYKYAEEA QKAVDRLDGR VVDGREMAVQ FAKYGPNAER
101: IHQGRIIEKV PGIKGSSRSR SPRRRYRDDY HRDREYRRSR SRSVDHYERD KYRQRERDYR HRSRSRSLSP DYDRDRGRGS DRKHHRRSPS VDSASPARRS
201: PSPHRKESPR RSLSPTKGSP ERRVRNERSP TPRSRSPPGR AMDSRSPSPR VDED

Best Arabidopsis Sequence Match ( AT5G64200.1 )
(BLAST)

001: MSHFGRSGPP DISDTYSLLV LNITFRTTAD DLYPLFAKYG KVVDVFIPRD RRTGDSRGFA FVRYKYKDEA HKAVERLDGR VVDGREITVQ FAKYGPNAEK
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE

Arabidopsis Description

SC35Serine/arginine-rich splicing factor SC35 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMG4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.