Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G169700.5 | Wheat | nucleus | 73.45 | 73.45 |
| TraesCS2A01G162700.3 | Wheat | nucleus | 58.18 | 67.23 |
| VIT_18s0001g05550.t01 | Wine grape | nucleus | 62.55 | 66.93 |
| GSMUA_Achr10P... | Banana | nucleus | 57.09 | 66.24 |
| TraesCS2B01G188600.1 | Wheat | nucleus, plastid | 65.45 | 66.18 |
| Solyc01g105140.2.1 | Tomato | nucleus | 60.36 | 65.35 |
| Os03t0388000-01 | Rice | mitochondrion, nucleus | 48.36 | 64.88 |
| VIT_12s0142g00110.t01 | Wine grape | nucleus | 60.0 | 64.71 |
| KRH58277 | Soybean | nucleus | 62.55 | 64.42 |
| PGSC0003DMT400032709 | Potato | nucleus | 59.27 | 64.17 |
| KRH42160 | Soybean | nucleus | 62.18 | 64.04 |
| Solyc04g074040.2.1 | Tomato | nucleus | 59.27 | 63.18 |
| PGSC0003DMT400045694 | Potato | nucleus | 58.18 | 62.02 |
| KXG39239 | Sorghum | nucleus | 52.0 | 60.59 |
| Bra024276.1-P | Field mustard | nucleus | 60.0 | 58.93 |
| Os08t0486200-02 | Rice | nucleus | 58.18 | 55.36 |
| HORVU2Hr1G029630.1 | Barley | plastid | 27.27 | 55.15 |
| AT5G64200.2 | Thale cress | nucleus | 58.91 | 53.47 |
| CDX84503 | Canola | nucleus | 41.45 | 42.07 |
| Os03t0374575-01 | Rice | nucleus | 26.55 | 33.64 |
| Os07t0633200-02 | Rice | nucleus | 25.09 | 32.39 |
| Os02t0252100-02 | Rice | nucleus | 29.09 | 30.19 |
| Os12t0572400-01 | Rice | nucleus | 26.55 | 27.76 |
| Os03t0363800-01 | Rice | nucleus | 22.91 | 25.93 |
| CDY43799 | Canola | vacuole | 29.82 | 25.39 |
| Zm00001d029380_P002 | Maize | cytosol, nucleus, plasma membrane | 38.18 | 24.31 |
| Os11t0704700-01 | Rice | nucleus | 26.55 | 14.29 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:4343955 | EMBL:AK070292 | ProteinID:BAC79909.1 | ProteinID:BAF22236.1 |
| ProteinID:BAT02713.1 | ProteinID:EEE67617.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os07g0623300 | EnsemblPlants:Os07t0623300-01 | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF42 | UniProt:Q8LHL0 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 | SUPFAM:SSF54928 | UniParc:UPI00001B3A93 | RefSeq:XP_015647052.1 |
| SEG:seg | : | : | : | : | : |
Description
Similar to Splicing factor SC35. (Os07t0623300-01)
Coordinates
chr7:+:25793520..25796646
Molecular Weight (calculated)
32244.6 Da
IEP (calculated)
11.848
GRAVY (calculated)
-1.517
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRFGRSGPP PIRDTYSLLV LNITFRTTAD DLSPLFEKYG EVVDIYIPRD RRTGDSRGFA FVRYKYEDEA QKAVDRLDGR VVDGREIMVQ FAKYGPNAER
101: IHKGKIMETV PRSRGRSRSR SPRRGYRDDY RERDYRKRSR SRDRYGRDRY RERDYRRRSR SRSYTPDDYR RRGRDSVSPA RRSLSRSRSR SYSPDDYRKR
201: GKHSQSPVCK SPSAKRSPSM SPARRSPSAS PARRSPSASP VRRSPSRSPR RTPSSQEGSP VKRYDEPRRS RSPST
101: IHKGKIMETV PRSRGRSRSR SPRRGYRDDY RERDYRKRSR SRDRYGRDRY RERDYRRRSR SRSYTPDDYR RRGRDSVSPA RRSLSRSRSR SYSPDDYRKR
201: GKHSQSPVCK SPSAKRSPSM SPARRSPSAS PARRSPSASP VRRSPSRSPR RTPSSQEGSP VKRYDEPRRS RSPST
001: MARARSRSRS YSPRPRDRSP PRERKGYDDN RLRERPSSRD HESSGPSGLL IRNLPLDARP NDLRDSFERF GPLKDIYLPR NYYTGEPRGF GFVKYRYAED
101: AAEAMKRMNH KVIGGREIAI VFAEENRKTP QEMRTTNGTS GRHGDYKRTS HRSPRRRYRS HSRSRSPPRR ESRHSKVRED DLYSPRRRSR SISRSPLPRN
201: EREYKSRNCR SPREERVLTP IRSRCLSRSR SRSLR
101: AAEAMKRMNH KVIGGREIAI VFAEENRKTP QEMRTTNGTS GRHGDYKRTS HRSPRRRYRS HSRSRSPPRR ESRHSKVRED DLYSPRRRSR SISRSPLPRN
201: EREYKSRNCR SPREERVLTP IRSRCLSRSR SRSLR
Arabidopsis Description
SCL28Serine/arginine-rich SC35-like splicing factor SCL28 [Source:UniProtKB/Swiss-Prot;Acc:Q1PDV2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.