Factsheet for Os11t0704700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0155600-01
Os01t0316600-01
Os01t0590900-01
Os01t0667800-01
Os02t0252100-02
Os02t0732200-01
Os03t0285900-01
Os03t0344100-02
Os03t0363800-01
Os03t0374575-01
Os03t0681900-01
Os04t0118900-01
Os05t0120100-01
Os05t0162600-01
Os05t0364600-01
Os05t0564200-01
Os06t0670400-00
Os06t0670500-01
Os07t0623300-01
Os07t0633200-02
Os07t0673500-01
Os09t0491756-01
Os09t0513700-01
Os11t0704700-01
Os12t0572400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55460.1	Os01t0316600-01	AT1G02840.1	18674533
AT3G55460.1	Os03t0344100-02	AT1G02840.1	18674533
AT3G55460.1	Os05t0364600-01	AT1G02840.1	18674533
AT3G55460.1	Os07t0673500-01	AT1G02840.1	18674533
AT3G55460.1	Os01t0316600-01	AT1G09140.1	18674533
AT3G55460.1	Os03t0344100-02	AT1G09140.1	18674533
AT3G55460.1	Os05t0364600-01	AT1G09140.1	18674533
AT3G55460.1	Os07t0673500-01	AT1G09140.1	18674533
AT3G55460.1	Os06t0670400-00	AT1G53720.1	16497658
AT3G55460.1	Os06t0670500-01	AT1G53720.1	16497658
AT3G55460.1	Os02t0732200-01	AT1G71020.1	21798944
AT3G55460.1	Os01t0155600-01	AT2G37340.1	18674533
AT3G55460.1	Os03t0285900-01	AT2G37340.1	18674533
AT3G55460.1	Os05t0120100-01	AT2G37340.1	18674533
AT3G55460.1	Os05t0162600-01	AT2G37340.1	18674533
AT3G55460.1	Os09t0513700-01	AT2G43370.1	15987817
AT3G55460.1	Os09t0513700-01	AT2G43370.1	21798944
AT3G55460.1	Os03t0374575-01	AT3G13570.1	18674533
AT3G55460.1	Os07t0633200-02	AT3G13570.1	18674533
AT3G55460.1	Os02t0252100-02	AT3G55460.1	18674533
AT3G55460.1	Os11t0704700-01	AT3G55460.1	18674533
AT3G55460.1	Os12t0572400-01	AT3G55460.1	18674533
AT3G55460.1	Os02t0252100-02	AT3G55460.1	21798944
AT3G55460.1	Os11t0704700-01	AT3G55460.1	21798944
AT3G55460.1	Os12t0572400-01	AT3G55460.1	21798944
AT3G55460.1	Os04t0118900-01	AT3G61860.1	18674533
AT3G55460.1	Os01t0590900-01	AT4G32660.1	21798944
AT3G55460.1	Os03t0681900-01	AT5G04280.1	21798944
AT3G55460.1	Os03t0363800-01	AT5G18810.1	18674533
AT3G55460.1	Os01t0667800-01	AT5G42820.1	21798944
AT3G55460.1	Os05t0564200-01	AT5G42820.1	21798944
AT3G55460.1	Os09t0491756-01	AT5G42820.1	21798944
AT3G55460.1	Os07t0623300-01	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0252100-02	Rice	nucleus	26.42	50.94
Os12t0572400-01	Rice	nucleus	25.64	49.81
GSMUA_Achr8P34280_001	Banana	nucleus	25.05	47.58
GSMUA_Achr1P17340_001	Banana	nucleus	24.66	47.01
EES10309	Sorghum	nucleus	24.66	46.67
KRH15102	Soybean	nucleus	24.07	45.39
KRH73034	Soybean	nucleus	24.27	44.93
Zm00001d048609_P001	Maize	nucleus, plastid	24.46	43.4
Os03t0374575-01	Rice	nucleus	18.0	42.4
CDY02941	Canola	nucleus	22.7	41.73
CDX76092	Canola	plastid	22.9	41.49
AT3G55460.1	Thale cress	mitochondrion, nucleus	20.55	40.08
Bra014741.1-P	Field mustard	mitochondrion, nucleus, plastid	22.9	39.66
Os07t0633200-02	Rice	nucleus	16.05	38.5
VIT_13s0019g01060.t01	Wine grape	nucleus	25.64	37.11
Os03t0363800-01	Rice	nucleus	15.66	32.92
Os07t0623300-01	Rice	nucleus	14.29	26.55
Os03t0388000-01	Rice	mitochondrion, nucleus	10.18	25.37
Os08t0486200-02	Rice	nucleus	14.09	24.91
TraesCS4A01G176000.13	Wheat	nucleus	26.03	14.62
TraesCS4D01G136700.4	Wheat	nucleus	25.24	14.22
TraesCS4B01G141700.1	Wheat	nucleus	19.77	12.72
HORVU4Hr1G027820.11	Barley	nucleus, plastid	24.66	11.52

Protein Annotations

MapMan:16.4.6.2	Gene3D:3.30.70.330	UniProt:A0A0P0Y5P0	ProteinID:BAT15404.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004252	GO:GO:0005488	GO:GO:0005575	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os11g0704700	EnsemblPlants:Os11t0704700-01	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR23147	PANTHER:PTHR23147:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000393B94E	SEG:seg	:	:	:

Description

RNA recognition motif domain domain containing protein. (Os11t0704700-01)

Coordinates

chr11:-:28846127..28852901

Molecular Weight (calculated)

57963.2 Da

IEP (calculated)

10.675

GRAVY (calculated)

-1.596

Length

511 amino acids

Sequence
(BLAST)

001: NTKIRHRRAM RSRSPSKRRR HGSRGRSPPS SRHGCAKDKE GAAVSLFVSN LPRSCRPEDV QVPFQKFGPV RDVYLPKDYN TGEPRGFAFV EFAHSSDASK
101: ARYHMNRKML SGREISVAFA VQTRKRPEEM RRIIGARHNS PQRKEECRTN SPGQPKGHDE KRKRRSYTPK YKDRQYADIG RDETPPAPDS ERPWALCRSP
201: RPSPPGQSHS RSYSRSHSLH LHDHARTRSC SPAPGRQDDQ YASPQRKEHQ TKSSGQTKGH DDMRRSYTPE YNECQDADNG FDETPPAPDG ERSSVLGRSP
301: RPSPPGRSHC HSHSRSRSPE LRGHARSRSC SPATGRQDNQ STSPQRREKH QTKSSGQAKE HDEKRRSYTP EYNDRRDADN GYDQTPPAPD GERSWALGRS
401: PQPSPPGRSH FHSHSRSRSP ELRGRARSRS CSPAPGRQGD DQYASPQRKE EQQTKSSRQT KEHDEERRSC TPEYSDRRDA FIGHDETPPS AEWGSKLGTV
501: QVISNTAASS N

Best Arabidopsis Sequence Match ( AT3G55460.1 )
(BLAST)

001: MRRYSPPYYS PPRRGYGGRG RSPPPPPPRR GYGGGGGGGG RRGSSHGSLL VRNIPLDCRP EELREPFERF GPVRDVYIPR DYYSGQPRGF AFVEFVDAYD
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR

Arabidopsis Description

SCL30Serine/arginine-rich SC35-like splicing factor SCL30 [Source:UniProtKB/Swiss-Prot;Acc:Q8L3X8]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.