CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88795
EER92211
EER92984
EER94870
EER97037
EER97602
EES00292
EES00987
EES07310
EES10309
EES11769
EES16196
EES18681
EES18924
KXG21152
KXG21387
KXG21391
KXG21829
KXG32406
KXG35922
KXG36736
KXG37841
KXG39239
KXG39307
OQU77498
OQU87301
OQU88590

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55460.1	EER94870	AT1G02840.1	18674533
AT3G55460.1	KXG21829	AT1G02840.1	18674533
AT3G55460.1	KXG32406	AT1G02840.1	18674533
AT3G55460.1	EER94870	AT1G09140.1	18674533
AT3G55460.1	KXG21829	AT1G09140.1	18674533
AT3G55460.1	KXG32406	AT1G09140.1	18674533
AT3G55460.1	EER88795	AT1G53720.1	16497658
AT3G55460.1	EES07310	AT1G71020.1	21798944
AT3G55460.1	EES00292	AT2G37340.1	18674533
AT3G55460.1	EES18924	AT2G37340.1	18674533
AT3G55460.1	KXG21152	AT2G37340.1	18674533
AT3G55460.1	KXG21387	AT2G37340.1	18674533
AT3G55460.1	KXG21391	AT2G37340.1	18674533
AT3G55460.1	OQU77498	AT2G37340.1	18674533
AT3G55460.1	EER97037	AT2G43370.1	15987817
AT3G55460.1	EER97037	AT2G43370.1	21798944
AT3G55460.1	EER92211	AT3G13570.1	18674533
AT3G55460.1	EER97602	AT3G13570.1	18674533
AT3G55460.1	EES10309	AT3G55460.1	18674533
AT3G55460.1	EES16196	AT3G55460.1	18674533
AT3G55460.1	EES10309	AT3G55460.1	21798944
AT3G55460.1	EES16196	AT3G55460.1	21798944
AT3G55460.1	EER92984	AT3G61860.1	18674533
AT3G55460.1	EES11769	AT3G61860.1	18674533
AT3G55460.1	EES00987	AT4G32660.1	21798944
AT3G55460.1	KXG37841	AT5G04280.1	21798944
AT3G55460.1	OQU88590	AT5G04280.1	21798944
AT3G55460.1	KXG39307	AT5G18810.1	18674533
AT3G55460.1	EES18681	AT5G42820.1	21798944
AT3G55460.1	KXG35922	AT5G42820.1	21798944
AT3G55460.1	OQU87301	AT5G42820.1	21798944
AT3G55460.1	KXG36736	AT5G64200.2	18674533
AT3G55460.1	KXG39239	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048609_P001	Maize	nucleus, plastid	93.33	87.5
EES16196	Sorghum	nucleus	66.67	68.7
GSMUA_Achr8P34280_001	Banana	nucleus	61.11	61.34
CDY02941	Canola	nucleus	62.96	61.15
CDX76092	Canola	plastid	62.96	60.28
AT3G55460.1	Thale cress	mitochondrion, nucleus	58.15	59.92
KRH15102	Soybean	nucleus	60.0	59.78
KRH73034	Soybean	nucleus	60.0	58.7
GSMUA_Achr1P17340_001	Banana	nucleus	58.15	58.58
Bra014741.1-P	Field mustard	mitochondrion, nucleus, plastid	62.96	57.63
EER92211	Sorghum	nucleus	40.74	51.64
EER97602	Sorghum	nucleus	38.52	49.76
VIT_13s0019g01060.t01	Wine grape	nucleus	62.96	48.16
KXG39307	Sorghum	nucleus	34.81	39.0
KXG36736	Sorghum	nucleus	27.41	29.6
KXG39239	Sorghum	nucleus	23.7	27.12
KXG25727	Sorghum	nucleus	25.93	25.64
Os11t0704700-01	Rice	nucleus	46.67	24.66
TraesCS4A01G176000.13	Wheat	nucleus	52.96	15.71
TraesCS4D01G136700.4	Wheat	nucleus	51.85	15.44
TraesCS4B01G141700.1	Wheat	nucleus	38.52	13.1
HORVU4Hr1G027820.11	Barley	nucleus, plastid	52.96	13.07

Protein Annotations

MapMan:16.4.6.2	Gene3D:3.30.70.330	EntrezGene:8086033	UniProt:C5Y8K9	EnsemblPlants:EES10309	ProteinID:EES10309
ProteinID:EES10309.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23147	PANTHER:PTHR23147:SF1
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3005G229000	SUPFAM:SSF54928	unigene:Sbi.17061
UniParc:UPI0001A86AC3	RefSeq:XP_002451321.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:71620398..71625154

Molecular Weight (calculated)

30775.7 Da

IEP (calculated)

11.646

GRAVY (calculated)

-1.614

Length

270 amino acids

Sequence
(BLAST)

001: MGRYSPAYSP PRRGYGGRGR SPPPRRGYGG GGGRGDHGSV SLLVRNIPLR CRPEELRVPF ERFGPVRDVY LPRDYHTGEP RGFGFVEFVD AYDASEAQYH
101: MNRQMFAGRE ITVVLAADTR KRPEDMRRRT GPRGYSGHEG RRPYRHGRSR SRSYSRSRSP RPRGRGRSQS YSPAPKRRDD YSASPPRSKE ENPRSSKQPK
201: ENDRDKKRRS YTPDDRNDRR GAENGHDERK KSPAGEEDEK PHRGRRRSPR PASMSPPGSR SRSASPAISS

Best Arabidopsis Sequence Match ( AT3G55460.1 )
(BLAST)

001: MRRYSPPYYS PPRRGYGGRG RSPPPPPPRR GYGGGGGGGG RRGSSHGSLL VRNIPLDCRP EELREPFERF GPVRDVYIPR DYYSGQPRGF AFVEFVDAYD
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR

Arabidopsis Description

SCL30Serine/arginine-rich SC35-like splicing factor SCL30 [Source:UniProtKB/Swiss-Prot;Acc:Q8L3X8]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.