Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04280.1 | EES10309 | AT3G55460.1 | 21798944 |
| AT5G04280.1 | EES16196 | AT3G55460.1 | 21798944 |
| AT5G04280.1 | KXG37841 | AT5G04280.1 | 21798944 |
| AT5G04280.1 | OQU88590 | AT5G04280.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d013543_P009 | Maize | extracellular, mitochondrion, plasma membrane | 89.56 | 91.0 |
| Os03t0681900-01 | Rice | nucleus | 83.23 | 85.39 |
| TraesCS4D01G023800.2 | Wheat | nucleus | 80.7 | 80.19 |
| TraesCS4B01G026400.1 | Wheat | nucleus | 80.7 | 79.94 |
| TraesCS4A01G288500.1 | Wheat | nucleus | 80.06 | 79.81 |
| GSMUA_Achr4P22370_001 | Banana | nucleus | 67.09 | 68.17 |
| GSMUA_Achr2P12550_001 | Banana | nucleus | 45.57 | 64.29 |
| OQU88590 | Sorghum | nucleus | 58.23 | 61.13 |
| VIT_13s0019g05080.t01 | Wine grape | nucleus | 53.48 | 60.79 |
| KRG90774 | Soybean | nucleus | 52.53 | 59.5 |
| PGSC0003DMT400043581 | Potato | nucleus | 48.73 | 56.83 |
| KRH35987 | Soybean | nucleus | 46.84 | 51.21 |
| VIT_08s0007g04870.t01 | Wine grape | cytosol | 40.19 | 51.21 |
| CDY11283 | Canola | nucleus | 49.05 | 50.65 |
| Bra005798.1-P | Field mustard | nucleus | 49.05 | 50.65 |
| Solyc03g071560.2.1 | Tomato | nucleus | 49.68 | 50.0 |
| CDX80910 | Canola | nucleus | 39.87 | 48.28 |
| AT5G04280.1 | Thale cress | cytosol, nucleus, plastid | 47.15 | 48.06 |
| GSMUA_Achr4P28550_001 | Banana | cytosol, mitochondrion, nucleus | 51.9 | 47.54 |
| AT1G60650.2 | Thale cress | nucleus | 43.35 | 46.92 |
| PGSC0003DMT400079815 | Potato | nucleus | 47.15 | 46.86 |
| CDY34132 | Canola | nucleus | 37.34 | 46.27 |
| EES16438 | Sorghum | nucleus | 23.73 | 45.45 |
| Solyc11g008210.1.1 | Tomato | nucleus | 42.41 | 45.42 |
| KXG37870 | Sorghum | nucleus | 23.42 | 43.53 |
| KXG37189 | Sorghum | nucleus | 25.95 | 41.21 |
| KXG24163 | Sorghum | nucleus | 26.9 | 38.99 |
| EES01954 | Sorghum | plastid | 16.14 | 34.69 |
| KXG36665 | Sorghum | mitochondrion | 9.81 | 29.52 |
| EES16016 | Sorghum | mitochondrion | 22.15 | 28.0 |
| EES14515 | Sorghum | plastid | 11.71 | 26.43 |
| EER97356 | Sorghum | plastid | 10.44 | 25.19 |
| EES10764 | Sorghum | mitochondrion | 10.76 | 25.19 |
| OQU88096 | Sorghum | cytosol, mitochondrion, nucleus | 4.75 | 23.08 |
| KXG36643 | Sorghum | mitochondrion | 22.47 | 22.47 |
| KXG32985 | Sorghum | cytosol, mitochondrion, nucleus | 4.75 | 22.39 |
| EER92461 | Sorghum | plastid | 11.71 | 21.89 |
| KXG26990 | Sorghum | plastid | 9.81 | 21.09 |
| EES02151 | Sorghum | mitochondrion, plastid | 8.86 | 19.18 |
| KXG30823 | Sorghum | plastid | 10.44 | 8.23 |
Protein Annotations
| MapMan:16.7.2 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | UniProt:A0A1B6QIU5 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0008270 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 |
| EnsemblPlants:KXG37841 | ProteinID:KXG37841 | ProteinID:KXG37841.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00098 |
| PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR44993 | PANTHER:PTHR44993:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00343 | SMART:SM00360 | EnsemblPlantsGene:SORBI_3001G136500 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | UniParc:UPI0001C80DB3 |
| InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:10799049..10804369
Molecular Weight (calculated)
34344.9 Da
IEP (calculated)
8.939
GRAVY (calculated)
-1.331
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGKEEGRIF VGGLSWQTDE RKLQDAFGRF GKVVDAQIML ERHTNRHRGF GFVTFEDRRA VDSAIKEMHG EELDGRTISV NKAEPKMNTD DTRYESGGGR
101: GEYRGGRGDG PPPGNCFECG RPGHWVRDCP SAAGGRSGRF SSKFSGGGGG GRGDRFSGSD RFGDRYMDDR YDGGRYGYRD QVDARDRYAG GRDRYANDRY
201: PSGGDHFGGD RYGGGPDRYV PGGYGRERER SYERDGVRGG GGSGYDRSGP RGGAGYDRDV PRGGGGGGYD RDGPRGGVAD RYGGGGPARY DGGSCRDRPG
301: PYDRPGRGGG RFDDRY
101: GEYRGGRGDG PPPGNCFECG RPGHWVRDCP SAAGGRSGRF SSKFSGGGGG GRGDRFSGSD RFGDRYMDDR YDGGRYGYRD QVDARDRYAG GRDRYANDRY
201: PSGGDHFGGD RYGGGPDRYV PGGYGRERER SYERDGVRGG GGSGYDRSGP RGGAGYDRDV PRGGGGGGYD RDGPRGGVAD RYGGGGPARY DGGSCRDRPG
301: PYDRPGRGGG RFDDRY
001: MAAKEGSRIF VGGLSPEVTD RDLERAFSRF GDILDCQIML ERDTGRSRGF GFITFADRRA MDESIREMHG RDFGDRVISV NRAEPKLGRD DGESHGSRGG
101: RDSGYSIAGK GSFGGGGGGG GRVGEDECFK CGRVGHWARD CPSAGGGRGG PVGGFSSRAS AYGGSDGRVD RYADRDRYVD RERYIDDRYD GAARYGARDR
201: FDSREAYIPR DRYASDRYAA PADRFAGGDR YSRGSDRYPP GSYDKARSFE RDIAPSAGSD RYGGGRAGGP IRGGGEEGRG FRSRAGAPYE RPSRSGGGGA
301: YPSSSTFDRY
101: RDSGYSIAGK GSFGGGGGGG GRVGEDECFK CGRVGHWARD CPSAGGGRGG PVGGFSSRAS AYGGSDGRVD RYADRDRYVD RERYIDDRYD GAARYGARDR
201: FDSREAYIPR DRYASDRYAA PADRFAGGDR YSRGSDRYPP GSYDKARSFE RDIAPSAGSD RYGGGRAGGP IRGGGEEGRG FRSRAGAPYE RPSRSGGGGA
301: YPSSSTFDRY
Arabidopsis Description
RZ1CGlycine-rich RNA-binding protein RZ1C [Source:UniProtKB/Swiss-Prot;Acc:Q8RWN5]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.