Factsheet for Solyc03g071560.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g071560.2.1
Solyc11g008210.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04280.1	Solyc03g071560.2.1	AT5G04280.1	21798944
AT5G04280.1	Solyc11g008210.1.1	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043581	Potato	nucleus	81.21	94.1
VIT_13s0019g05080.t01	Wine grape	nucleus	61.78	69.78
KRG90774	Soybean	nucleus	58.28	65.59
Solyc11g008210.1.1	Tomato	nucleus	58.28	62.03
KRH35987	Soybean	nucleus	52.55	57.09
GSMUA_Achr2P12550_001	Banana	nucleus	38.53	54.02
GSMUA_Achr4P22370_001	Banana	nucleus	52.87	53.38
Bra005798.1-P	Field mustard	nucleus	51.91	53.27
CDY11283	Canola	nucleus	51.91	53.27
AT5G04280.1	Thale cress	cytosol, nucleus, plastid	51.59	52.26
CDX80910	Canola	nucleus	42.99	51.72
Zm00001d033511_P002	Maize	cytosol, mitochondrion, nucleus	48.09	50.84
AT1G60650.2	Thale cress	nucleus	46.5	50.0
KXG37841	Sorghum	nucleus	50.0	49.68
TraesCS2D01G238900.1	Wheat	nucleus	45.86	49.15
Os03t0681900-01	Rice	nucleus	48.09	49.03
TraesCS2B01G259400.1	Wheat	nucleus	45.54	48.81
TraesCS2A01G237400.1	Wheat	nucleus	45.54	48.81
TraesCS4D01G023800.2	Wheat	nucleus	49.36	48.74
Zm00001d013543_P009	Maize	extracellular, mitochondrion, plasma membrane	48.09	48.55
TraesCS4B01G026400.1	Wheat	nucleus	49.04	48.28
TraesCS4A01G288500.1	Wheat	nucleus	48.73	48.27
CDY34132	Canola	nucleus	39.17	48.24
OQU88590	Sorghum	nucleus	45.54	47.51
Solyc10g051390.1.1	Tomato	nucleus	17.52	46.61
Zm00001d019041_P001	Maize	extracellular, plasma membrane	42.99	46.08
Solyc10g051380.1.1	Tomato	nucleus	18.47	44.62
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	47.77	43.48
Solyc01g109660.2.1	Tomato	extracellular	23.25	41.71
Solyc10g047130.1.1	Tomato	nucleus	27.71	36.4
Zm00001d007799_P001	Maize	mitochondrion, plastid	43.31	35.42
Solyc09g092320.2.1	Tomato	mitochondrion, nucleus	12.74	34.48
Solyc05g053780.2.1	Tomato	mitochondrion	17.2	33.54
Solyc10g081180.1.1	Tomato	nucleus	21.66	30.91
Solyc01g104840.2.1	Tomato	nucleus	21.02	29.6
Solyc10g083240.1.1	Tomato	mitochondrion	11.78	28.68
Solyc10g084630.1.1	Tomato	mitochondrion	11.15	25.36
Solyc07g063900.2.1	Tomato	plastid	12.1	25.17
Solyc07g049270.2.1	Tomato	mitochondrion	11.15	24.82
Solyc02g066930.2.1	Tomato	nucleus	16.56	24.07
Solyc09g011210.2.1	Tomato	plastid	9.55	22.73
Solyc06g035610.2.1	Tomato	mitochondrion	9.87	21.53
Solyc02g088790.2.1	Tomato	extracellular, plastid	21.66	18.23
Solyc11g007160.1.1	Tomato	plastid	9.55	7.5

Protein Annotations

MapMan:16.7.2	Gene3D:3.30.70.330	Gene3D:4.10.60.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	UniProt:K4BHI6
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR44993
PANTHER:PTHR44993:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928
SUPFAM:SSF57756	EnsemblPlantsGene:Solyc03g071560.2	EnsemblPlants:Solyc03g071560.2.1	UniParc:UPI0002767BC9	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:+:18193482..18202656

Molecular Weight (calculated)

34821.9 Da

IEP (calculated)

8.511

GRAVY (calculated)

-1.205

Length

314 amino acids

Sequence
(BLAST)

001: MQVAYGSNAN TYIPGEEQGG GCTGEGGAKQ QQIKQFRREK TLEMSGKVQD CRIFVGGLSW DVTEHQLEDA FSPFGKIVDC QVMLDRDTGR PRGFGFLTFA
101: DRRAMEDAIR EMDGAEVGDR VISVNKAQPK MGSEDPDHGY GGGYISGGRA SYGGGNRSVG QDTCFSCGRP GHWARDCPLE GGGRGARPLT PPSRSRYGGT
201: RGDRFGSDRD RYMDDRYDRG NHADRERYDS RYESRDRYAS DRYPPGGDRL GNRYGSSDRY PQSGYGKEKG FDRDVGGRYE GGGPARYEGR SYRDRAGPYD
301: RPGRGGRPPS FDRY

Best Arabidopsis Sequence Match ( AT1G60650.1 )
(BLAST)

001: MKDRENDGNL ESRIFVGGLS WDVTERQLES TFDRYGKITE CQIMVGRDTG RPRGFGFITF TDRRGADDAI KHMHGRELGN KVISVNKAEP KVGGEDVDQL
101: KKGGGYSSRG KGTEDECFKC RRPGHWARDC PSTGDDRERF RVPLAMRSRI GDIDGHRDRY GDRDLERERE REREFDRYMD GRRDRDGGRY SYRDRFDSGD
201: KYEPRDHYPF ERYAPPGDRF VSDRYGMPEH HLENEYRGRE RSYDRDRYAR DTSDRYGDMG PIRDEGRPYR SRPGPYDRPS RPGGRPSSYE RW

Arabidopsis Description

RZ1BGlycine-rich RNA-binding protein RZ1B [Source:UniProtKB/Swiss-Prot;Acc:O22703]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.