Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400045627 | Potato | nucleus | 88.28 | 98.6 |
| KRH42209 | Soybean | endoplasmic reticulum | 53.97 | 73.3 |
| KRH58335 | Soybean | nucleus | 62.34 | 71.63 |
| KXG37189 | Sorghum | nucleus | 59.0 | 70.85 |
| Os03t0836200-03 | Rice | nucleus | 59.83 | 69.76 |
| Zm00001d034768_P005 | Maize | nucleus | 59.0 | 68.78 |
| TraesCS4A01G355700.1 | Wheat | nucleus | 55.65 | 63.03 |
| KXG24163 | Sorghum | nucleus | 57.32 | 62.84 |
| Bra025205.1-P | Field mustard | nucleus | 59.41 | 61.21 |
| CDX83617 | Canola | nucleus | 59.0 | 60.78 |
| TraesCS5D01G516500.1 | Wheat | nucleus | 56.07 | 60.36 |
| TraesCS5B01G516400.1 | Wheat | nucleus | 55.23 | 60.27 |
| CDY13632 | Canola | nucleus | 59.83 | 59.83 |
| Bra032933.1-P | Field mustard | nucleus | 60.25 | 59.26 |
| CDY48990 | Canola | nucleus | 60.25 | 59.26 |
| CDY52166 | Canola | nucleus | 58.58 | 57.61 |
| HORVU7Hr1G078140.5 | Barley | nucleus | 54.39 | 56.52 |
| TraesCS7D01G323600.1 | Wheat | nucleus | 54.39 | 56.52 |
| TraesCS7B01G227500.2 | Wheat | nucleus | 54.39 | 56.52 |
| AT3G26420.1 | Thale cress | nucleus | 57.74 | 56.33 |
| TraesCS7A01G326800.1 | Wheat | nucleus | 54.39 | 54.85 |
| Solyc01g104840.2.1 | Tomato | nucleus | 51.05 | 54.71 |
| VIT_18s0166g00180.t01 | Wine grape | mitochondrion | 64.44 | 54.04 |
| Solyc10g051390.1.1 | Tomato | nucleus | 25.1 | 50.85 |
| Solyc10g051380.1.1 | Tomato | nucleus | 26.36 | 48.46 |
| HORVU5Hr1G118010.1 | Barley | mitochondrion, nucleus | 56.9 | 43.59 |
| GSMUA_Achr5P26170_001 | Banana | nucleus, peroxisome, plasma membrane | 30.54 | 43.45 |
| GSMUA_Achr3P22540_001 | Banana | nucleus, peroxisome, plasma membrane | 35.98 | 41.95 |
| Solyc09g092320.2.1 | Tomato | mitochondrion, nucleus | 19.25 | 39.66 |
| Solyc01g109660.2.1 | Tomato | extracellular | 28.45 | 38.86 |
| GSMUA_Achr8P07840_001 | Banana | mitochondrion, nucleus, plasma membrane | 30.54 | 38.22 |
| Solyc05g053780.2.1 | Tomato | mitochondrion | 22.59 | 33.54 |
| Solyc10g083240.1.1 | Tomato | mitochondrion | 16.32 | 30.23 |
| Solyc10g084630.1.1 | Tomato | mitochondrion | 16.74 | 28.99 |
| Solyc10g081180.1.1 | Tomato | nucleus | 25.94 | 28.18 |
| Solyc03g071560.2.1 | Tomato | nucleus | 36.4 | 27.71 |
| Solyc02g066930.2.1 | Tomato | nucleus | 24.27 | 26.85 |
| Solyc11g008210.1.1 | Tomato | nucleus | 32.64 | 26.44 |
| Solyc07g063900.2.1 | Tomato | plastid | 16.32 | 25.83 |
| Solyc07g049270.2.1 | Tomato | mitochondrion | 13.81 | 23.4 |
| Solyc06g035610.2.1 | Tomato | mitochondrion | 12.97 | 21.53 |
| Solyc09g011210.2.1 | Tomato | plastid | 11.72 | 21.21 |
| Solyc02g088790.2.1 | Tomato | extracellular, plastid | 23.43 | 15.01 |
| Solyc11g007160.1.1 | Tomato | plastid | 15.06 | 9.0 |
Protein Annotations
| MapMan:16.7.2 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0008270 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | UniProt:K4CZX7 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00098 | PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR45429 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 |
| EnsemblPlantsGene:Solyc10g047130.1 | EnsemblPlants:Solyc10g047130.1.1 | UniParc:UPI0002769BCF | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg |
Description
No Description!
Coordinates
chr10:+:39865238..39867368
Molecular Weight (calculated)
25848.5 Da
IEP (calculated)
8.033
GRAVY (calculated)
-1.130
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEDDEYRCF IGNLSWSTSE RGLKDAFRKF GNLLDAKVVV DKFSGRSKGF GFVTFDEKKA MEEAIDAMNG MDLDGRAITV DKAQPQQSSG RDYDSNRPHD
101: RDRDRGRDRS RSDREYGGGR GSGGGECFKC GKPGHFAREC PSEEGRGGRY GGRDDRYGGG GGGGSRGSGY GPERNGDRFG NCSSRDGGGH GGGERYNRDR
201: SGPYDRRGSG SRAAEELGAN QAGYRGFEVC LMASCFLGL
101: RDRDRGRDRS RSDREYGGGR GSGGGECFKC GKPGHFAREC PSEEGRGGRY GGRDDRYGGG GGGGSRGSGY GPERNGDRFG NCSSRDGGGH GGGERYNRDR
201: SGPYDRRGSG SRAAEELGAN QAGYRGFEVC LMASCFLGL
001: MSEDPEYRCF IGGLAWTTSD RGLRDAFEKY GHLVEAKVVL DKFSGRSRGF GFITFDEKKA MDEAIAAMNG MDLDGRTITV DKAQPHQGGA GRDNDGDRGR
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH
Arabidopsis Description
RZ1AGlycine-rich RNA-binding protein RZ1A [Source:UniProtKB/Swiss-Prot;Acc:Q9LIN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.