Factsheet for Solyc07g063900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 4
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g082980.2.1
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc03g118230.1.1
Solyc03g123840.2.1
Solyc06g072990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54580.1	Solyc03g118230.1.1	AT2G33550.1	21798944
AT5G54580.1	Solyc03g123840.2.1	AT3G21215.1	21798944
AT5G54580.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT5G54580.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT5G54580.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT5G54580.1	Solyc06g072990.1.1	AT3G49580.1	21798944
AT5G54580.1	Solyc03g082980.2.1	AT5G53060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049607	Potato	plastid	96.69	92.99
VIT_19s0014g04770.t01	Wine grape	mitochondrion	65.56	73.33
Bra002976.1-P	Field mustard	mitochondrion	47.02	68.27
GSMUA_Achr11P...	Banana	mitochondrion	48.34	67.59
KRH25927	Soybean	mitochondrion, plastid	62.25	64.83
KRH55574	Soybean	mitochondrion, plastid	62.25	64.83
GSMUA_Achr5P26410_001	Banana	cytosol, mitochondrion, nucleus	47.02	61.74
Bra029020.1-P	Field mustard	plastid	62.25	61.44
CDY42466	Canola	plastid	62.25	61.44
CDY43035	Canola	plastid	62.25	61.44
CDY64931	Canola	plastid	61.59	60.78
GSMUA_Achr8P07380_001	Banana	mitochondrion	54.3	60.74
CDY43820	Canola	plastid	62.25	59.87
EES14515	Sorghum	plastid	54.97	59.29
Zm00001d024675_P001	Maize	mitochondrion	54.3	58.57
AT5G54580.1	Thale cress	mitochondrion, plastid	60.26	58.33
Os08t0139000-02	Rice	mitochondrion	54.3	58.16
TraesCS7B01G207500.1	Wheat	mitochondrion	57.62	57.24
TraesCS7A01G307200.1	Wheat	plastid	56.95	56.21
Solyc06g035610.2.1	Tomato	mitochondrion	47.02	49.31
Solyc10g084630.1.1	Tomato	mitochondrion	39.07	42.75
Solyc09g092320.2.1	Tomato	mitochondrion, nucleus	28.48	37.07
Solyc10g083240.1.1	Tomato	mitochondrion	31.13	36.43
Solyc09g011210.2.1	Tomato	plastid	29.8	34.09
Solyc10g051390.1.1	Tomato	nucleus	21.85	27.97
Solyc05g053780.2.1	Tomato	mitochondrion	28.48	26.71
Solyc10g051380.1.1	Tomato	nucleus	20.53	23.85
Solyc10g081180.1.1	Tomato	nucleus	31.13	21.36
Solyc07g049270.2.1	Tomato	mitochondrion	19.87	21.28
Solyc01g109660.2.1	Tomato	extracellular	24.5	21.14
Solyc02g066930.2.1	Tomato	nucleus	28.48	19.91
Solyc10g047130.1.1	Tomato	nucleus	25.83	16.32
Solyc01g104840.2.1	Tomato	nucleus	23.18	15.7
Solyc03g071560.2.1	Tomato	nucleus	25.17	12.1
Solyc02g088790.2.1	Tomato	extracellular, plastid	29.14	11.8
Solyc11g007160.1.1	Tomato	plastid	28.48	10.75
Solyc11g008210.1.1	Tomato	nucleus	14.57	7.46

Protein Annotations

EnsemblPlants:Solyc07g063900.2.1	EnsemblPlantsGene:Solyc07g063900.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR45392	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI000276C21A	UniProt:K4CH73	MapMan:16.12.5.2	:	:	:

Description

No Description!

Coordinates

chr7:+:66243290..66247237

Molecular Weight (calculated)

16299.2 Da

IEP (calculated)

10.070

GRAVY (calculated)

-0.469

Length

151 amino acids

Sequence
(BLAST)

001: MALRAAKAAA PATRGLRALL STFSPSFPFN TPSKQVEKPP PAEPSTNLFV SGLSKRTTSE GLREAFVKHG EVVHARVVTD RVSGYSKGFG FVRYATLEDA
101: EAGIKGMDGQ FLDGWVIFAE YARPRPPPPS MQNNNTTPGY GNYNSSPYGS Q

Best Arabidopsis Sequence Match ( AT5G54580.1 )
(BLAST)

001: MAMAMRLPAI SRAVTEVASA PVGLRRLFCS NASRFSFLSP QAESQTPARP QAEPSTNLFV SGLSKRTTSE GLRTAFAQFG EVADAKVVTD RVSGYSKGFG
101: FVRYATLEDS AKGIAGMDGK FLDGWVIFAE YARPREQSQS YQPQNNMSRP PYYGNR

Arabidopsis Description

ORRM2Organelle RRM domain-containing protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FIU6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.