CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX85279
CDX96185
CDY06428
CDY08148
CDY17185
CDY23727
CDY27030
CDY27533
CDY27959
CDY37307
CDY37710
CDY49453
CDY56908

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54580.1	CDX85279	AT2G33550.1	21798944
AT5G54580.1	CDY17185	AT2G33550.1	21798944
AT5G54580.1	CDY23727	AT2G33550.1	21798944
AT5G54580.1	CDY27959	AT2G33550.1	21798944
AT5G54580.1	CDY37710	AT2G33550.1	21798944
AT5G54580.1	CDY06428	AT3G21215.1	21798944
AT5G54580.1	CDY27533	AT3G21215.1	21798944
AT5G54580.1	CDY37307	AT3G21215.1	21798944
AT5G54580.1	CDY08148	AT3G49580.1	21798944
AT5G54580.1	CDX96185	AT5G53060.1	21798944
AT5G54580.1	CDY27030	AT5G53060.1	21798944
AT5G54580.1	CDY49453	AT5G53060.1	21798944
AT5G54580.1	CDY56908	AT5G53060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64931	Canola	plastid	97.39	97.39
CDY43035	Canola	plastid	94.77	94.77
Bra002976.1-P	Field mustard	mitochondrion	64.05	94.23
CDY43820	Canola	plastid	95.42	92.99
AT5G54580.1	Thale cress	mitochondrion, plastid	90.85	89.1
KRH55574	Soybean	mitochondrion, plastid	60.13	63.45
PGSC0003DMT400049607	Potato	plastid	64.05	62.42
Solyc07g063900.2.1	Tomato	plastid	61.44	62.25
KRH25927	Soybean	mitochondrion, plastid	58.82	62.07
GSMUA_Achr11P...	Banana	mitochondrion	42.48	60.19
Zm00001d024675_P001	Maize	mitochondrion	54.9	60.0
EES14515	Sorghum	plastid	54.9	60.0
GSMUA_Achr8P07380_001	Banana	mitochondrion	52.29	59.26
GSMUA_Achr5P26410_001	Banana	cytosol, mitochondrion, nucleus	44.44	59.13
Os08t0139000-02	Rice	mitochondrion	53.59	58.16
TraesCS7B01G207500.1	Wheat	mitochondrion	55.56	55.92
TraesCS7A01G307200.1	Wheat	plastid	54.25	54.25
VIT_08s0007g00070.t01	Wine grape	mitochondrion	43.79	50.38
CDX91368	Canola	plastid	40.52	42.76
CDX82066	Canola	cytosol, nucleus, plastid	26.8	42.71
CDX74955	Canola	plastid	39.87	42.07
CDY09244	Canola	mitochondrion	22.22	32.69
CDY04982	Canola	mitochondrion	30.07	31.51
CDY14089	Canola	mitochondrion	29.41	30.82
CDY06468	Canola	mitochondrion	29.41	30.41
CDY08312	Canola	mitochondrion	29.41	29.41
CDY47311	Canola	mitochondrion	27.45	29.17
CDY31588	Canola	nucleus	14.38	28.21
CDY41969	Canola	cytosol	23.53	28.12
CDY47314	Canola	mitochondrion	27.45	28.0
CDY46213	Canola	nucleus	22.22	27.87
CDY53035	Canola	mitochondrion	27.45	27.81
CDY19230	Canola	mitochondrion	24.84	27.34
CDY31170	Canola	mitochondrion, nucleus	23.53	27.27
CDX83260	Canola	mitochondrion	22.88	26.12
CDY26743	Canola	mitochondrion	24.18	25.0
CDX82164	Canola	mitochondrion	22.88	24.14
CDY51614	Canola	mitochondrion	22.22	23.45
CDY42616	Canola	cytosol	23.53	22.93
CDY28003	Canola	plastid	20.91	22.22
CDY35978	Canola	mitochondrion, plastid	20.26	21.68
CDY12133	Canola	cytosol	22.22	21.52
CDY70933	Canola	nucleus	23.53	21.43
CDY15876	Canola	nucleus	23.53	21.3
CDX90323	Canola	plastid	22.88	21.21
CDY59763	Canola	nucleus	22.88	20.96
CDY72366	Canola	nucleus	22.88	20.47
CDX71276	Canola	nucleus	22.88	20.35
CDX71070	Canola	mitochondrion	19.61	19.74
CDY65478	Canola	endoplasmic reticulum	24.18	17.79
CDY42426	Canola	mitochondrion	28.1	17.77
CDY49123	Canola	mitochondrion	28.1	16.17
CDX73070	Canola	mitochondrion	27.45	15.56
CDX96526	Canola	mitochondrion	27.45	15.11
CDY16825	Canola	plastid	25.49	14.83
CDX83617	Canola	nucleus	22.22	14.66
CDY48990	Canola	nucleus	22.88	14.4
CDY13632	Canola	nucleus	22.22	14.23
CDY52166	Canola	nucleus	22.22	13.99
CDY02175	Canola	mitochondrion	26.14	11.8
CDY19589	Canola	plastid	28.76	11.8
CDX87197	Canola	plastid	24.84	11.55
CDY06395	Canola	nucleus	27.45	10.55
CDY11283	Canola	nucleus	18.95	9.48
CDY34132	Canola	nucleus	12.42	7.45
CDX80910	Canola	nucleus	10.46	6.13

Protein Annotations

MapMan:16.12.5.2	Gene3D:3.30.70.330	GO:A0A078HXK3	UniProt:A0A078HXK3	EnsemblPlants:CDY42466	ProteinID:CDY42466
ProteinID:CDY42466.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00074892001
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45392
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EDB823	SEG:seg

Description

BnaA10g08420DBnaA10g08420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXK3]

Coordinates

chrLK032525:-:141303..142817

Molecular Weight (calculated)

16669.9 Da

IEP (calculated)

10.101

GRAVY (calculated)

-0.320

Length

153 amino acids

Sequence
(BLAST)

001: MAMAMRLPAI ARAATEMASA PVGLRRLFCS SASKFSFLSP QANAETPARP QAEPSTNLFV SGLSKRTTSE GLRTAFAQFG EVADAKVVTD RVSGYSKGFG
101: FVRYTTLEDS AKGIAGMDGK FLDGWVIFAE YARPREPYRP QNNMPPPPYG NRY

Best Arabidopsis Sequence Match ( AT5G54580.1 )
(BLAST)

001: MAMAMRLPAI SRAVTEVASA PVGLRRLFCS NASRFSFLSP QAESQTPARP QAEPSTNLFV SGLSKRTTSE GLRTAFAQFG EVADAKVVTD RVSGYSKGFG
101: FVRYATLEDS AKGIAGMDGK FLDGWVIFAE YARPREQSQS YQPQNNMSRP PYYGNR

Arabidopsis Description

ORRM2Organelle RRM domain-containing protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FIU6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.