Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 6
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008020.1-P | Field mustard | endoplasmic reticulum | 99.04 | 99.04 |
| CDX82164 | Canola | mitochondrion | 38.94 | 55.86 |
| CDY51614 | Canola | mitochondrion | 35.58 | 51.03 |
| CDY06468 | Canola | mitochondrion | 27.88 | 39.19 |
| CDY47314 | Canola | mitochondrion | 26.92 | 37.33 |
| CDY08312 | Canola | mitochondrion | 27.4 | 37.25 |
| CDY53035 | Canola | mitochondrion | 26.92 | 37.09 |
| CDY47311 | Canola | mitochondrion | 25.48 | 36.81 |
| CDY19230 | Canola | mitochondrion | 24.04 | 35.97 |
| CDY42426 | Canola | mitochondrion | 40.87 | 35.12 |
| CDY26743 | Canola | mitochondrion | 23.56 | 33.11 |
| CDY49123 | Canola | mitochondrion | 41.35 | 32.33 |
| CDY46213 | Canola | nucleus | 18.27 | 31.15 |
| CDX73070 | Canola | mitochondrion | 40.38 | 31.11 |
| CDX96526 | Canola | mitochondrion | 40.87 | 30.58 |
| CDY04982 | Canola | mitochondrion | 20.67 | 29.45 |
| AT1G74230.1 | Thale cress | mitochondrion, plastid | 40.87 | 29.41 |
| CDY41969 | Canola | cytosol | 17.79 | 28.91 |
| CDY09244 | Canola | mitochondrion | 14.42 | 28.85 |
| CDY14089 | Canola | mitochondrion | 20.19 | 28.77 |
| CDY31588 | Canola | nucleus | 10.1 | 26.92 |
| CDX83260 | Canola | mitochondrion | 17.31 | 26.87 |
| CDY15876 | Canola | nucleus | 21.63 | 26.63 |
| CDY31170 | Canola | mitochondrion, nucleus | 16.83 | 26.52 |
| CDY28003 | Canola | plastid | 18.27 | 26.39 |
| CDY59763 | Canola | nucleus | 21.15 | 26.35 |
| CDY72366 | Canola | nucleus | 21.15 | 25.73 |
| CDY70933 | Canola | nucleus | 20.67 | 25.6 |
| CDX82066 | Canola | cytosol, nucleus, plastid | 11.54 | 25.0 |
| CDX91368 | Canola | plastid | 17.31 | 24.83 |
| CDX74955 | Canola | plastid | 17.31 | 24.83 |
| PGSC0003DMT400072235 | Potato | mitochondrion, nucleus | 31.25 | 24.71 |
| CDY35978 | Canola | mitochondrion, plastid | 16.83 | 24.48 |
| CDX71276 | Canola | nucleus | 20.19 | 24.42 |
| CDY42616 | Canola | cytosol | 18.27 | 24.2 |
| CDY42466 | Canola | plastid | 17.79 | 24.18 |
| CDY64931 | Canola | plastid | 17.31 | 23.53 |
| CDY12133 | Canola | cytosol | 17.79 | 23.42 |
| CDY16825 | Canola | plastid | 29.33 | 23.19 |
| Solyc10g081180.1.1 | Tomato | nucleus | 24.52 | 23.18 |
| CDX90323 | Canola | plastid | 18.27 | 23.03 |
| CDY43035 | Canola | plastid | 16.83 | 22.88 |
| CDY43820 | Canola | plastid | 16.83 | 22.29 |
| CDX87197 | Canola | plastid | 29.33 | 18.54 |
| CDX71070 | Canola | mitochondrion | 13.46 | 18.42 |
| CDY02175 | Canola | mitochondrion | 29.81 | 18.29 |
| CDX83617 | Canola | nucleus | 18.75 | 16.81 |
| CDY13632 | Canola | nucleus | 18.75 | 16.32 |
| CDY48990 | Canola | nucleus | 18.27 | 15.64 |
| CDY52166 | Canola | nucleus | 17.79 | 15.23 |
| CDY34132 | Canola | nucleus | 13.94 | 11.37 |
| CDY11283 | Canola | nucleus | 14.42 | 9.8 |
| CDY19589 | Canola | plastid | 15.87 | 8.85 |
| CDY06395 | Canola | nucleus | 15.38 | 8.04 |
| CDX80910 | Canola | nucleus | 8.17 | 6.51 |
Protein Annotations
| MapMan:16.12.5.2 | Gene3D:3.30.70.330 | GO:A0A078JCW7 | UniProt:A0A078JCW7 | EnsemblPlants:CDY65478 | ProteinID:CDY65478 |
| ProteinID:CDY65478.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00046665001 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45502 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EE9C78 | SEG:seg | : |
Description
BnaA02g35600DBnaA02g35600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JCW7]
Coordinates
chrLK034803:+:3216..4886
Molecular Weight (calculated)
23628.5 Da
IEP (calculated)
4.451
GRAVY (calculated)
0.274
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLFLMFRSL IDCSLFAGFS EFDLGFNLCH QKKVEFYIGD ALRQTSTHVT ASNSMLQSIR CMSSSKIFVG GISYSTDEFG LREAFSKYGQ VVDAKIFVDR
101: ETGRSRGFAF VTFTSNLEAT NAMQLDRQAI YCFCFLEHST FMVEELGWTS LLKEEEDLEE GGWVVQVVVL FFMMILYRVV TLTIFLFGAI DNLAWQFGGS
201: ENESLIPP
101: ETGRSRGFAF VTFTSNLEAT NAMQLDRQAI YCFCFLEHST FMVEELGWTS LLKEEEDLEE GGWVVQVVVL FFMMILYRVV TLTIFLFGAI DNLAWQFGGS
201: ENESLIPP
001: MAFLSKVGRL FSQTSSHVTA SSSMLQSIRC MSSSKIFVGG ISYSTDEFGL REAFSKYGEV VDAKIIVDRE TGRSRGFAFV TFTSTEEASN AMQLDGQDLH
101: GRRIRVNYAT ERGSGFGGRG FGGPGGGYGA SDGGYGAPAG GYGGGAGGYG GNSSYSGNAG GGGGYGGNSS YGGNAGGYGG NPPYSGNAVG GGGGYGSNFG
201: GGGGYGVAGG VGGSENFAQG SSTNAGFDDK FESNQPLGND TDHQTESGLG GDEQFGGSDN QFGDAENGNT ENGPVGFDQT DDGDVAKRA
101: GRRIRVNYAT ERGSGFGGRG FGGPGGGYGA SDGGYGAPAG GYGGGAGGYG GNSSYSGNAG GGGGYGGNSS YGGNAGGYGG NPPYSGNAVG GGGGYGSNFG
201: GGGGYGVAGG VGGSENFAQG SSTNAGFDDK FESNQPLGND TDHQTESGLG GDEQFGGSDN QFGDAENGNT ENGPVGFDQT DDGDVAKRA
Arabidopsis Description
RBG5Glycine-rich RNA-binding protein 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C909]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.