Factsheet for PGSC0003DMT400072235

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
mitochondrion 5
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001613

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G18630.1	PGSC0003DMT400001613	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g081180.1.1	Tomato	nucleus	78.71	94.09
PGSC0003DMT400084266	Potato	extracellular	30.42	49.69
PGSC0003DMT400040748	Potato	mitochondrion	27.38	49.66
CDX82164	Canola	mitochondrion	27.38	49.66
PGSC0003DMT400053017	Potato	mitochondrion, plastid	28.14	48.68
PGSC0003DMT400083014	Potato	nucleus	30.04	47.59
PGSC0003DMT400084258	Potato	nucleus	30.04	47.59
PGSC0003DMT400084290	Potato	nucleus	30.04	47.59
AT1G18630.1	Thale cress	mitochondrion	27.76	47.1
PGSC0003DMT400001879	Potato	cytosol	31.18	46.59
CDY51614	Canola	mitochondrion	25.1	45.52
CDY26743	Canola	mitochondrion	25.48	45.27
PGSC0003DMT400064758	Potato	mitochondrion	42.97	45.02
Bra008142.1-P	Field mustard	mitochondrion	43.73	43.56
Bra025674.1-P	Field mustard	mitochondrion	23.95	43.45
CDY49123	Canola	mitochondrion	43.73	43.23
CDY42426	Canola	mitochondrion	39.54	42.98
CDY19230	Canola	mitochondrion	22.43	42.45
CDX96526	Canola	mitochondrion	44.49	42.09
CDX73070	Canola	mitochondrion	42.59	41.48
Bra015926.1-P	Field mustard	mitochondrion	44.87	41.4
AT1G74230.1	Thale cress	mitochondrion, plastid	43.35	39.45
PGSC0003DMT400001786	Potato	nucleus	10.27	38.57
PGSC0003DMT400072597	Potato	mitochondrion	17.49	35.66
PGSC0003DMT400003685	Potato	nucleus	39.54	34.32
CDY65478	Canola	endoplasmic reticulum	24.71	31.25
PGSC0003DMT400076497	Potato	nucleus	24.33	31.22
PGSC0003DMT400049607	Potato	plastid	18.63	31.21
Bra008020.1-P	Field mustard	endoplasmic reticulum	24.33	30.77
PGSC0003DMT400045627	Potato	nucleus	23.57	28.97
PGSC0003DMT400056141	Potato	mitochondrion	14.45	25.68
PGSC0003DMT400028726	Potato	nucleus	14.07	25.34
PGSC0003DMT400043581	Potato	nucleus	25.86	25.09
PGSC0003DMT400070114	Potato	endoplasmic reticulum, extracellular	12.55	22.15
PGSC0003DMT400022733	Potato	plastid	13.69	22.09
PGSC0003DMT400079815	Potato	nucleus	23.95	19.81
PGSC0003DMT400050134	Potato	plastid	16.35	10.75

Protein Annotations

MapMan:16.12.5.2	MapMan:16.7.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1CPX1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG400028111	PGSC:PGSC0003DMG400028111	EnsemblPlants:PGSC0003DMT400072235	PFscan:PS50102	PANTHER:PTHR44202	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928	UniParc:UPI0002952131
SEG:seg	:	:	:	:	:

Description

Glycine-rich RNA-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028111]

Coordinates

chr10:-:56762685..56764546

Molecular Weight (calculated)

26582.5 Da

IEP (calculated)

4.614

GRAVY (calculated)

-0.652

Length

263 amino acids

Sequence
(BLAST)

001: MAFFNKAGSI LRQAVSKQHI NHEISASKPS IFQLIRCMSS KLFVGGISWN TNDNSLQEAF SKYGEVVEAR IIYDRESGRS RGFGFVTFNT SEDASAAIQA
101: LDGQELDGRT IRVNVANDRT RGYGGGGGGG GYGGGNYGGG GGYGGGGGGN YGSGGYGGGG GNYGSGGGNY GASGYGSSGN YGRGGGVDAN VASSYGSGEN
201: SSGFGTSGDN YASGSTDAAS NSFSFGNDAT SNQAEACDVN SPVDAGENYR DNNDSSDYAD RRA

Best Arabidopsis Sequence Match ( AT5G61030.2 )
(BLAST)

001: MAFLSKFGNI LKQTTNKQLN AQVSLSSPSL FQAIRCMSSS KLFIGGMAYS MDEDSLREAF TKYGEVVDTR VILDRETGRS RGFGFVTFTS SEAASSAIQA
101: LDGRDLHGRV VKVNYANDRT SGGGFGGGGY GGGGGGYGGS GGYGGGAGGY GGSGGYGGGA GGYGGNSGGG YGGNAAGGYG GSGAGGYGGD ATGHGGAGGG
201: YGSSGGFGSS GNTYGEGSSA SAGAVGDYNG SSGYGSANTY GSSNGGFAGD SQFGGSPVGN SSQFGGDNTQ FTAGGQFGGE DQFGSMEKSE TKMEDGPIGG
301: EFEDVAKRA

Arabidopsis Description

RBG3GR-RBP3 [Source:UniProtKB/TrEMBL;Acc:A0A178UBT5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.