Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400084290 | Potato | nucleus | 100.0 | 100.0 |
| PGSC0003DMT400084258 | Potato | nucleus | 100.0 | 100.0 |
| Solyc10g051380.1.1 | Tomato | nucleus | 76.51 | 97.69 |
| KRH29453 | Soybean | nucleus | 65.06 | 77.14 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 73.49 | 75.31 |
| KRH29452 | Soybean | nucleus | 70.48 | 75.0 |
| PGSC0003DMT400084266 | Potato | extracellular | 71.08 | 73.29 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 58.43 | 72.93 |
| CDY41969 | Canola | cytosol | 56.02 | 72.66 |
| Bra010693.1-P | Field mustard | nucleus | 70.48 | 70.91 |
| CDX90323 | Canola | plastid | 70.48 | 70.91 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 72.29 | 70.59 |
| KRH51528 | Soybean | nucleus | 77.11 | 70.33 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 65.66 | 70.32 |
| CDY46213 | Canola | nucleus | 51.2 | 69.67 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 66.27 | 69.62 |
| KRH29451 | Soybean | nucleus | 71.08 | 69.01 |
| CDY42616 | Canola | cytosol | 65.06 | 68.79 |
| KRH29454 | Soybean | nucleus | 69.88 | 68.24 |
| Bra011869.1-P | Field mustard | cytosol | 66.27 | 67.9 |
| Bra001972.1-P | Field mustard | nucleus | 66.87 | 67.68 |
| AT4G39260.1 | Thale cress | nucleus | 68.67 | 67.46 |
| Bra030284.1-P | Field mustard | nucleus | 68.07 | 67.26 |
| CDY59763 | Canola | nucleus | 67.47 | 67.07 |
| PGSC0003DMT400001879 | Potato | cytosol | 71.08 | 67.05 |
| KRH60842 | Soybean | mitochondrion | 74.7 | 67.03 |
| CDY15876 | Canola | nucleus | 68.07 | 66.86 |
| CDY70933 | Canola | nucleus | 67.47 | 66.67 |
| Bra031210.1-P | Field mustard | nucleus | 67.47 | 66.67 |
| Zm00001d041246_P001 | Maize | nucleus | 57.83 | 66.21 |
| TraesCS4B01G020300.1 | Wheat | extracellular | 64.46 | 65.64 |
| CDY12133 | Canola | cytosol | 62.05 | 65.19 |
| Zm00001d031168_P001 | Maize | plastid | 60.84 | 65.16 |
| CDY72366 | Canola | nucleus | 66.87 | 64.91 |
| AT2G21660.1 | Thale cress | nucleus | 68.07 | 64.2 |
| TraesCS4A01G293000.1 | Wheat | plastid | 62.65 | 64.2 |
| TraesCS5B01G013200.1 | Wheat | nucleus | 64.46 | 64.07 |
| CDX71276 | Canola | nucleus | 66.27 | 63.95 |
| TraesCS4D01G018500.1 | Wheat | nucleus | 63.25 | 63.25 |
| EES16438 | Sorghum | nucleus | 62.65 | 63.03 |
| TraesCS5A01G015000.1 | Wheat | nucleus | 63.86 | 62.35 |
| Os12t0632000-01 | Rice | nucleus | 60.84 | 62.35 |
| TraesCS5D01G020900.1 | Wheat | plastid | 64.46 | 61.49 |
| KXG37870 | Sorghum | nucleus | 62.65 | 61.18 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 58.43 | 61.01 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 56.02 | 60.0 |
| TraesCS6A01G216500.1 | Wheat | nucleus | 56.63 | 58.02 |
| TraesCS6B01G246400.1 | Wheat | nucleus | 56.63 | 58.02 |
| HORVU6Hr1G055440.1 | Barley | nucleus | 56.02 | 57.41 |
| HORVU5Hr1G002150.1 | Barley | nucleus | 51.81 | 49.71 |
| Os03t0670700-01 | Rice | nucleus | 55.42 | 46.94 |
| HORVU5Hr1G089190.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 25.9 | 43.43 |
| PGSC0003DMT400040748 | Potato | mitochondrion | 35.54 | 40.69 |
| PGSC0003DMT400053017 | Potato | mitochondrion, plastid | 34.94 | 38.16 |
| PGSC0003DMT400045627 | Potato | nucleus | 44.58 | 34.58 |
| PGSC0003DMT400076497 | Potato | nucleus | 41.57 | 33.66 |
| PGSC0003DMT400001786 | Potato | nucleus | 13.86 | 32.86 |
| PGSC0003DMT400072235 | Potato | mitochondrion, nucleus | 47.59 | 30.04 |
| PGSC0003DMT400072597 | Potato | mitochondrion | 22.29 | 28.68 |
| PGSC0003DMT400064758 | Potato | mitochondrion | 39.76 | 26.29 |
| PGSC0003DMT400043581 | Potato | nucleus | 41.57 | 25.46 |
| PGSC0003DMT400003685 | Potato | nucleus | 45.18 | 24.75 |
| PGSC0003DMT400028726 | Potato | nucleus | 21.69 | 24.66 |
| PGSC0003DMT400049607 | Potato | plastid | 20.48 | 21.66 |
| PGSC0003DMT400070114 | Potato | endoplasmic reticulum, extracellular | 19.28 | 21.48 |
| PGSC0003DMT400079815 | Potato | nucleus | 40.96 | 21.38 |
| PGSC0003DMT400056141 | Potato | mitochondrion | 18.07 | 20.27 |
| PGSC0003DMT400022733 | Potato | plastid | 18.67 | 19.02 |
| PGSC0003DMT400050134 | Potato | plastid | 18.67 | 7.75 |
Protein Annotations
| EntrezGene:102588150 | EntrezGene:102600363 | MapMan:16.7.2 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M1D7M9 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | EnsemblPlantsGene:PGSC0003DMG400033020 | PGSC:PGSC0003DMG400033020 | EnsemblPlants:PGSC0003DMT400083014 | PFscan:PS50102 | PANTHER:PTHR45040 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002963CEC | RefSeq:XP_006349601.1 |
| RefSeq:XP_006368094.1 | SEG:seg | : | : | : | : |
Description
RNA-binding gricine-rich protein-1c [Source:PGSC_GENE;Acc:PGSC0003DMG400033020]
Coordinates
chr00:+:41563574..41564557
Molecular Weight (calculated)
16756.9 Da
IEP (calculated)
9.345
GRAVY (calculated)
-0.878
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVEVEYRCF VGGLAWATND RTLGEAFSQY GNVVDSKIIN DRETGRSRGF GFVTFTDEKS MRNAIEAMNG QNLDGRNITV NEAQSRGSGG GGGGFGGGRR
101: GGGGGGFGGG GGYNGGGGGY GRREGGNGGG YGGGRDRGYG GGGDRYGDGG SRYSRGGGAS EGSWRN
101: GGGGGGFGGG GGYNGGGGGY GRREGGNGGG YGGGRDRGYG GGGDRYGDGG SRYSRGGGAS EGSWRN
1: MSEVEYRCFV GGLAWATNDE DLQRTFSQFG DVIDSKIIND RESGRSRGFG FVTFKDEKAM RDAIEEMNGK ELDGRVITVN EAQSRGSGGG GW
Arabidopsis Description
RBG8Glycine-rich RNA-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q03251]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.