Factsheet for Bra010693.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90323	Canola	plastid	100.0	100.0
CDY12133	Canola	cytosol	84.85	88.61
Bra011869.1-P	Field mustard	cytosol	84.24	85.8
AT4G39260.1	Thale cress	nucleus	85.45	83.43
Solyc10g051390.1.1	Tomato	nucleus	55.76	77.97
Bra030284.1-P	Field mustard	nucleus	78.79	77.38
Bra031210.1-P	Field mustard	nucleus	77.58	76.19
Solyc10g051380.1.1	Tomato	nucleus	57.58	73.08
Bra001972.1-P	Field mustard	nucleus	71.52	71.95
PGSC0003DMT400083014	Potato	nucleus	70.91	70.48
PGSC0003DMT400084258	Potato	nucleus	70.91	70.48
PGSC0003DMT400084290	Potato	nucleus	70.91	70.48
VIT_03s0063g02610.t01	Wine grape	nucleus	69.09	70.37
TraesCS5B01G013200.1	Wheat	nucleus	70.91	70.06
GSMUA_Achr7P27650_001	Banana	nucleus	56.36	69.92
GSMUA_Achr8P05200_001	Banana	cytosol	65.45	69.68
KRH29451	Soybean	nucleus	70.91	68.42
PGSC0003DMT400084266	Potato	extracellular	66.67	68.32
Solyc01g109660.2.1	Tomato	extracellular	72.12	68.0
TraesCS5A01G015000.1	Wheat	nucleus	69.7	67.65
KRH29452	Soybean	nucleus	63.64	67.31
Zm00001d013568_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	64.85	67.3
KRH29453	Soybean	nucleus	56.97	67.14
GSMUA_Achr4P14550_001	Banana	nucleus	64.24	67.09
PGSC0003DMT400001879	Potato	cytosol	71.52	67.05
Zm00001d041246_P001	Maize	nucleus	58.79	66.9
TraesCS5D01G020900.1	Wheat	plastid	70.3	66.67
TraesCS6A01G216500.1	Wheat	nucleus	65.45	66.67
Os12t0632000-01	Rice	nucleus	65.45	66.67
TraesCS6B01G246400.1	Wheat	nucleus	65.45	66.67
GSMUA_Achr3P30570_001	Banana	plasma membrane	68.48	66.47
HORVU6Hr1G055440.1	Barley	nucleus	64.85	66.05
KXG37870	Sorghum	nucleus	67.88	65.88
Zm00001d031168_P001	Maize	plastid	61.82	65.81
TraesCS6D01G199100.1	Wheat	nucleus	61.82	65.81
TraesCS4B01G020300.1	Wheat	extracellular	64.85	65.64
TraesCS4A01G293000.1	Wheat	plastid	64.24	65.43
KRH51528	Soybean	nucleus	72.12	65.38
EES16438	Sorghum	nucleus	64.85	64.85
TraesCS4D01G018500.1	Wheat	nucleus	64.85	64.46
KRH29454	Soybean	nucleus	63.64	61.76
KRH60842	Soybean	mitochondrion	67.88	60.54
HORVU5Hr1G002150.1	Barley	nucleus	57.58	54.91
Os03t0670700-01	Rice	nucleus	58.18	48.98
Bra013997.1-P	Field mustard	mitochondrion	41.82	47.59
HORVU5Hr1G089190.1	Barley	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	27.27	45.45
Bra037056.1-P	Field mustard	mitochondrion	41.21	45.33
Bra025674.1-P	Field mustard	mitochondrion	32.12	36.55
Bra014000.1-P	Field mustard	mitochondrion	47.27	35.14
Bra032933.1-P	Field mustard	nucleus	45.45	30.86
Bra002976.1-P	Field mustard	mitochondrion	19.39	30.77
Bra025205.1-P	Field mustard	nucleus	42.42	30.17
Bra008142.1-P	Field mustard	mitochondrion	46.06	28.79
Bra020279.1-P	Field mustard	mitochondrion	18.79	28.18
Bra015926.1-P	Field mustard	mitochondrion	48.48	28.07
Bra008100.1-P	Field mustard	cytosol	13.33	26.83
Bra035944.1-P	Field mustard	plastid	42.42	26.62
Bra005189.1-P	Field mustard	plastid	23.03	26.39
Bra012986.1-P	Field mustard	mitochondrion	46.06	24.92
Bra028739.1-P	Field mustard	mitochondrion	21.21	23.97
Bra029692.1-P	Field mustard	mitochondrion	20.0	23.08
Bra029020.1-P	Field mustard	plastid	21.21	22.88
Bra005798.1-P	Field mustard	nucleus	40.0	21.57
Bra008020.1-P	Field mustard	endoplasmic reticulum	23.03	18.27
Bra000516.1-P	Field mustard	mitochondrion	14.55	17.91
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	18.18	11.67
Bra031244.1-P	Field mustard	plastid	18.79	8.31

Protein Annotations

EnsemblPlants:Bra010693.1	EnsemblPlants:Bra010693.1-P	EnsemblPlantsGene:Bra010693	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0002546963	UniProt:M4D2J3	MapMan:16.7.2	:	:	:

Description

AT4G39260 (E=2e-038) CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding / nucleic acid binding / nucleotide binding

Coordinates

chrA08:+:16024352..16025102

Molecular Weight (calculated)

16049.1 Da

IEP (calculated)

4.973

GRAVY (calculated)

-0.804

Length

165 amino acids

Sequence
(BLAST)

001: MSGEAEYRCF VGGLAWATAD ADLERTFSQF GEVIDSKIIN DRETGRSRGF GFVTFKDEKS MRDAIEEMNG KELDGRTITV NEAQSRGSGG GGGGRGGGGG
101: YRGGGGGGYG GGGGYGGGGG GYGRRDGGGY GSGGGGGYGG RRDGGGYGGG DGGYGGNSGG GGGGW

Best Arabidopsis Sequence Match ( AT4G39260.3 )
(BLAST)

1: MSEVEYRCFV GGLAWATNDE DLQRTFSQFG DVIDSKIIND RESGRSRGFG FVTFKDEKAM RDAIEEMNGK ELDGRVITVN EAQSRGSGGG GW

Arabidopsis Description

RBG8Glycine-rich RNA-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q03251]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.