Factsheet for Bra013997.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47314	Canola	mitochondrion	98.62	95.33
Bra037056.1-P	Field mustard	mitochondrion	86.9	84.0
AT4G13850.1	Thale cress	mitochondrion	81.38	74.68
Bra014000.1-P	Field mustard	mitochondrion	100.0	65.32
PGSC0003DMT400040748	Potato	mitochondrion	61.38	61.38
Solyc09g092320.2.1	Tomato	mitochondrion, nucleus	48.28	60.34
KRG97345	Soybean	mitochondrion	57.93	59.57
Solyc05g053780.2.1	Tomato	mitochondrion	63.45	57.14
VIT_05s0029g00440.t01	Wine grape	mitochondrion, nucleus, plastid	58.62	55.92
GSMUA_Achr7P02750_001	Banana	mitochondrion	57.24	55.33
PGSC0003DMT400053017	Potato	mitochondrion, plastid	56.55	53.95
GSMUA_Achr4P16080_001	Banana	mitochondrion	64.14	48.95
KRH31570	Soybean	mitochondrion	46.21	46.21
Bra001972.1-P	Field mustard	nucleus	47.59	42.07
Bra011869.1-P	Field mustard	cytosol	46.9	41.98
Bra010693.1-P	Field mustard	nucleus	47.59	41.82
Bra030284.1-P	Field mustard	nucleus	46.9	40.48
Bra025674.1-P	Field mustard	mitochondrion	40.0	40.0
Bra031210.1-P	Field mustard	nucleus	46.21	39.88
Bra002976.1-P	Field mustard	mitochondrion	25.52	35.58
Bra020279.1-P	Field mustard	mitochondrion	26.21	34.55
Bra005189.1-P	Field mustard	plastid	33.1	33.33
Bra029692.1-P	Field mustard	mitochondrion	32.41	32.87
Bra008142.1-P	Field mustard	mitochondrion	53.1	29.17
Bra028739.1-P	Field mustard	mitochondrion	28.97	28.77
Bra029020.1-P	Field mustard	plastid	28.97	27.45
Bra035944.1-P	Field mustard	plastid	49.66	27.38
Bra015926.1-P	Field mustard	mitochondrion	53.79	27.37
Bra008100.1-P	Field mustard	cytosol	15.17	26.83
Bra008020.1-P	Field mustard	endoplasmic reticulum	37.24	25.96
Bra012986.1-P	Field mustard	mitochondrion	51.03	24.26
Bra000516.1-P	Field mustard	mitochondrion	21.38	23.13
Bra025205.1-P	Field mustard	nucleus	33.79	21.12
Bra032933.1-P	Field mustard	nucleus	33.79	20.16
Bra005798.1-P	Field mustard	nucleus	29.66	14.05
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	23.45	13.23
Bra031244.1-P	Field mustard	plastid	29.66	11.53

Protein Annotations

EnsemblPlants:Bra013997.1	EnsemblPlants:Bra013997.1-P	EnsemblPlantsGene:Bra013997	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44202	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002546EB5	UniProt:M4DBY5	MapMan:16.7.2	MapMan:16.12.5.2	:

Description

AT4G13850 (E=1e-051) ATGRP2 | GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2); ATP binding / RNA binding / double-stranded DNA binding / single-stranded DNA binding

Coordinates

chrA08:-:4776599..4777300

Molecular Weight (calculated)

14845.3 Da

IEP (calculated)

6.686

GRAVY (calculated)

-0.339

Length

145 amino acids

Sequence
(BLAST)

001: MAFCKSLGGL LRQGAVSQTG NVPVQSMLGS LRYMSTKLFV GGLSWGTDDQ SLREAFSNFG EVIDSKVIVD RETGRSRGFG FVNFSDESAA NAAISEMDGK
101: ELNGRNIRVN VANDRPSAPR AYGGGGGGYG GGGGGYGGGG DGGGY

Best Arabidopsis Sequence Match ( AT4G13850.2 )
(BLAST)

001: MAFCNKLGGL LRQNISSNGN VPVTSMLGSL RLMSTKLFIG GLSWGTDDAS LRDAFAHFGD VVDAKVIVDR ETGRSRGFGF VNFNDEGAAT AAISEMDGKE
101: LNGRHIRVNP ANDRPSAPRA YGGGGGYSYG GGGGGYGGGG GGYGGGGDGG GGF

Arabidopsis Description

RBG2Glycine-rich RNA-binding protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SVM8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.