CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 21766870
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31570	Soybean	mitochondrion	76.6	74.48
VIT_05s0029g00440.t01	Wine grape	mitochondrion, nucleus, plastid	67.38	62.5
Solyc09g092320.2.1	Tomato	mitochondrion, nucleus	48.94	59.48
CDY47311	Canola	mitochondrion	59.57	58.33
Bra013997.1-P	Field mustard	mitochondrion	59.57	57.93
CDY06468	Canola	mitochondrion	59.57	56.76
CDY47314	Canola	mitochondrion	60.28	56.67
AT3G23830.1	Thale cress	mitochondrion, plastid	54.61	56.62
PGSC0003DMT400040748	Potato	mitochondrion	58.16	56.55
CDY53035	Canola	mitochondrion	60.28	56.29
Bra037056.1-P	Field mustard	mitochondrion	58.87	55.33
AT4G13850.1	Thale cress	mitochondrion	61.7	55.06
GSMUA_Achr7P02750_001	Banana	mitochondrion	58.16	54.67
PGSC0003DMT400053017	Potato	mitochondrion, plastid	58.87	54.61
CDY08312	Canola	mitochondrion	58.87	54.25
Solyc05g053780.2.1	Tomato	mitochondrion	58.87	51.55
GSMUA_Achr4P16080_001	Banana	mitochondrion	62.41	46.32
KRH23034	Soybean	mitochondrion	23.4	38.37
Bra014000.1-P	Field mustard	mitochondrion	60.28	38.29
KRH10291	Soybean	nucleus	19.15	36.49
KRH17905	Soybean	cytosol, mitochondrion, nucleus	21.28	36.14
KRH50325	Soybean	vacuole	34.04	34.29
KRH67959	Soybean	mitochondrion	30.5	33.08
KRH29453	Soybean	nucleus	32.62	32.86
KRH67547	Soybean	mitochondrion	31.91	32.37
KRG95817	Soybean	mitochondrion	30.5	30.94
KRH77758	Soybean	mitochondrion	23.4	29.2
KRH27720	Soybean	endoplasmic reticulum, mitochondrion	19.86	28.87
KRH29452	Soybean	nucleus	31.91	28.85
KRH29454	Soybean	nucleus	34.75	28.82
KRH29451	Soybean	nucleus	34.75	28.66
KRH03133	Soybean	nucleus	55.32	28.36
KRH01278	Soybean	mitochondrion, nucleus, plastid	48.94	28.28
KRH25927	Soybean	mitochondrion, plastid	29.08	28.28
KRH55574	Soybean	mitochondrion, plastid	29.08	28.28
KRH56813	Soybean	mitochondrion	53.19	27.37
KRH45033	Soybean	nucleus, plastid	47.52	27.35
KRH51528	Soybean	nucleus	34.04	26.37
KRH42209	Soybean	endoplasmic reticulum	32.62	26.14
KRH60842	Soybean	mitochondrion	34.04	25.95
KRH24829	Soybean	mitochondrion	23.4	22.6
KRH58335	Soybean	nucleus	33.33	22.6
KRH24832	Soybean	endoplasmic reticulum	20.57	20.57
KRH09475	Soybean	plastid	24.82	19.44
KRH38934	Soybean	plastid	16.31	14.94
KRH40931	Soybean	mitochondrion	23.4	14.29
KRG90774	Soybean	nucleus	27.66	13.98
KRH35987	Soybean	nucleus	20.57	10.03
KRG92035	Soybean	plastid	27.66	10.0
KRH54698	Soybean	plastid	47.52	9.94

Protein Annotations

MapMan:16.12.5.2	Gene3D:3.30.70.330	EMBL:ACUP02010794	EnsemblPlantsGene:GLYMA_18G002000	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	UniProt:I1MYA1	InterPro:IPR000504	InterPro:IPR012677	EnsemblPlants:KRG97345
ProteinID:KRG97345	ProteinID:KRG97345.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45040
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00023DA7A6	SEG:seg

Description

hypothetical protein

Coordinates

chr18:+:173530..175647

Molecular Weight (calculated)

14798.1 Da

IEP (calculated)

8.196

GRAVY (calculated)

-0.406

Length

141 amino acids

Sequence
(BLAST)

001: MAFCNKVGNV LRQGAARSTH APVASMLNYI RCMSSSKLFI GGLSYGVDDQ SLKDAFSGFG DVVDVITDRD SGRSRGFGFV NFSNDESASS ALSAMDGKDL
101: NGRSIRVSYA NDKPSAPRPG GGGGYRGGDY DGDFASRSGG W

Best Arabidopsis Sequence Match ( AT4G13850.2 )
(BLAST)

001: MAFCNKLGGL LRQNISSNGN VPVTSMLGSL RLMSTKLFIG GLSWGTDDAS LRDAFAHFGD VVDAKVIVDR ETGRSRGFGF VNFNDEGAAT AAISEMDGKE
101: LNGRHIRVNP ANDRPSAPRA YGGGGGYSYG GGGGGYGGGG GGYGGGGDGG GGF

Arabidopsis Description

RBG2Glycine-rich RNA-binding protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SVM8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.